From 5efa7634705c04da620061fcf1c4f78fa884eb6c Mon Sep 17 00:00:00 2001
From: lucile varloteaux <lucile.varloteaux@inrae.fr>
Date: Thu, 6 Jul 2023 13:44:31 +0200
Subject: [PATCH 1/5] front repository refactoring
---
ui/src/components/common/CollapseMenu.vue | 57 +++++++++++--------
ui/src/style/_variables.scss | 4 +-
ui/src/views/common/MenuView.vue | 2 +-
.../datatype/DataTypesRepositoryView.vue | 18 +++---
4 files changed, 48 insertions(+), 33 deletions(-)
diff --git a/ui/src/components/common/CollapseMenu.vue b/ui/src/components/common/CollapseMenu.vue
index a1cfd0288..25c66fcb7 100644
--- a/ui/src/components/common/CollapseMenu.vue
+++ b/ui/src/components/common/CollapseMenu.vue
@@ -1,7 +1,9 @@
<template>
<div v-if="option.isLeaf"
+ :id="option.currentPath"
+ class="white"
:value="option.referenceValues"
- style="padding: 5px;"
+ style="padding: 5px 16px;"
@click="select()">
<a>{{ option.localName }}</a>
</div>
@@ -9,7 +11,6 @@
:open="isOpen"
animation="slide"
class="card"
- style="padding: 10px;"
>
<template #trigger="props">
<div
@@ -27,13 +28,12 @@
</a>
</div>
</template>
- <div class="card-content" style="padding: 5px;">
+ <div class="card-content" style="padding: 5px">
<div :ref="option.key" class="content" @select-menu-item="select">
<collapse-menu
v-for="(opt, itemKey) in option.referenceValues"
:key="itemKey"
:option="opt"
- :scroll="option.referenceValues.length > 6"
@select-menu-item="select">
</collapse-menu>
</div>
@@ -46,7 +46,6 @@ export default {
name: "CollapseMenu",
props: {
option: {},
- scroll: Boolean,
},
data() {
return {
@@ -57,69 +56,81 @@ export default {
methods: {
select: function (option) {
this.$emit("select-menu-item", option || this.option);
- },
- init: function () {
- if (this.scroll) {
- console.log(this.scroll)
- }
}
},
}
</script>
<style lang="scss" scoped>
+a {
+ color: black;
+}
.card {
+ box-shadow: 0 0.5em 1em -0.125em rgba(10, 10, 10, 0), 0 0px 0 1px rgba(10, 10, 10, 0);
.card-header {
- background-color: rgb(0, 100, 100);
- color: white;
+ color: $primary;
+ border-bottom: solid $primary;
+ border-bottom-right-radius: 0;
+ border-bottom-left-radius: 0;
.card-header-title {
- color: white;
+ color: $primary;
margin: 0;
}
}
.card-content {
+ border-bottom: solid $primary;
+ border-bottom-right-radius: 0;
+ border-bottom-left-radius: 0;
+
.collapse {
padding: 0;
.card-header {
- background-color: rgba(0, 100, 100, 0.8);
- color: white;
+ color: $primary-slightly-transparent-8;
+ border-bottom: solid $primary-slightly-transparent-8;
.card-header-title {
- color: white;
+ color: $primary-slightly-transparent-8;
margin: 0;
}
}
.card-content {
+ border-bottom: solid $primary-slightly-transparent-8;
+
.collapse {
padding: 0;
.card-header {
- background-color: rgba(0, 100, 100, 0.6);
- color: white;
+ color: $primary-slightly-transparent-6;
+ border-bottom: solid $primary-slightly-transparent-6;
.card-header-title {
- color: white;
+ color: $primary-slightly-transparent-6;
margin: 0;
}
}
.card-content {
+ border-bottom: solid $primary-slightly-transparent-6;
+
.collapse {
padding: 0;
.card-header {
- background-color: rgba(0, 100, 100, 0.4);
- color: white;
+ color: $primary-slightly-transparent-4;
+ border-bottom: solid $primary-slightly-transparent-4;
.card-header-title {
- color: white;
- margin: 0;
+ color: $primary-slightly-transparent-4;
}
}
+
+ .card-content {
+ border-bottom: solid $primary-slightly-transparent-4;
+ }
}
}
}
diff --git a/ui/src/style/_variables.scss b/ui/src/style/_variables.scss
index 55a4ba356..47be3ac25 100644
--- a/ui/src/style/_variables.scss
+++ b/ui/src/style/_variables.scss
@@ -6,7 +6,9 @@ $font-family: "LiberationSans", Helvetica, Arial, sans-serif;
$text-default-color: #2c3e50;
$light-text: rgb(230, 230, 230);
-$primary-slightly-transparent: rgba(0, 157, 157, 0.8);
+$primary-slightly-transparent-8: rgba(0, 157, 157, 0.8);
+$primary-slightly-transparent-6: rgba(0, 157, 157, 0.6);
+$primary-slightly-transparent-4: rgba(0, 157, 157, 0.4);
$info-transparent: rgba(20, 155, 170, 0.3);
// PageView
diff --git a/ui/src/views/common/MenuView.vue b/ui/src/views/common/MenuView.vue
index c6b216570..0be0d348c 100644
--- a/ui/src/views/common/MenuView.vue
+++ b/ui/src/views/common/MenuView.vue
@@ -223,7 +223,7 @@ export default class MenuView extends Vue {
.menu-view-collapsible-icon {
width: 100%;
- background-color: $primary-slightly-transparent;
+ background-color: $primary-slightly-transparent-8;
height: 30px;
opacity: 0.8;
diff --git a/ui/src/views/datatype/DataTypesRepositoryView.vue b/ui/src/views/datatype/DataTypesRepositoryView.vue
index d043e433b..7481ffb6a 100644
--- a/ui/src/views/datatype/DataTypesRepositoryView.vue
+++ b/ui/src/views/datatype/DataTypesRepositoryView.vue
@@ -19,7 +19,7 @@
<div class="columns">
<div class="column">
<b-field>
- <b-dropdown :ref="authKey" expanded scrollable>
+ <b-dropdown :ref="authKey" expanded scrollable max-height="500" width="500">
<template #trigger="{ active }">
<b-button
:icon-right="active ? 'chevron-up' : 'chevron-down'"
@@ -35,18 +35,11 @@
}}
</b-button>
</template>
- <!-- <DropDownMenu
- v-for="(option, optionKey) in authReference"
- :key="optionKey"
- :option="option"
- @select-menu-item="selectAuthorization(authKey, $event)"
- />-->
<CollapseMenu
v-for="(option, optionKey) in authReference"
:id="optionKey"
:key="optionKey"
:option="option"
- :scroll="authReference.length > 6"
@select-menu-item="selectAuthorization(authKey, $event)"></CollapseMenu>
</b-dropdown>
</b-field>
@@ -362,6 +355,7 @@ export default class DataTypesRepositoryView extends Vue {
configuration = {};
authorizations = [];
authReferences = {};
+ currantPathSelected = "";
selected = null;
loading = false;
requiredAuthorizationsObject = null;
@@ -706,6 +700,14 @@ export default class DataTypesRepositoryView extends Vue {
}
selectAuthorization(key, event) {
+ if (this.currantPathSelected !== "" && this.currantPathSelected !== event.currentPath) {
+ document.getElementById(this.currantPathSelected).style.backgroundColor = "white";
+ this.currantPathSelected = event.currentPath;
+ }
+ if(this.currantPathSelected === "") {
+ this.currantPathSelected = event.currentPath;
+ }
+ document.getElementById(this.currantPathSelected).style.backgroundColor = "rgba(0,139,139,15%)";
this.selected.requiredAuthorizations[key] = event.referenceValues.hierarchicalKey;
this.requiredAuthorizationsObject[key] = event.completeLocalName;
this.datasets = this.currentDataset = null;
--
GitLab
From 38f5d943d5a0e270bdecc2834f227b5cc26fa0e7 Mon Sep 17 00:00:00 2001
From: lucile varloteaux <lucile.varloteaux@inrae.fr>
Date: Mon, 10 Jul 2023 15:25:07 +0200
Subject: [PATCH 2/5] ajout gestion colonne unexpected avec repeatedColumns
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
- collecter les erreur incorrect et les remontées
- erreur columnNotFound
if (line.isEmpty()) {
throw new IllegalArgumentException(); //(|| return false)
}
---
.../fr/inra/oresing/rest/OreSiService.java | 35 ++++++++++++++-----
1 file changed, 26 insertions(+), 9 deletions(-)
diff --git a/src/main/java/fr/inra/oresing/rest/OreSiService.java b/src/main/java/fr/inra/oresing/rest/OreSiService.java
index 8b304b40f..b4499d8ee 100644
--- a/src/main/java/fr/inra/oresing/rest/OreSiService.java
+++ b/src/main/java/fr/inra/oresing/rest/OreSiService.java
@@ -248,7 +248,7 @@ public class OreSiService {
}
}
- validateStoredData(new DownloadDatasetQuery(nameOrId, app,null, dataType, null, null, null, null,null,null));
+ validateStoredData(new DownloadDatasetQuery(nameOrId, app, null, dataType, null, null, null, null, null, null));
}
// on supprime l'ancien fichier vu que tout c'est bien passé
@@ -651,7 +651,7 @@ public class OreSiService {
IntegerChecker integerChecker = (IntegerChecker) lineChecker;
final VariableComponentKey vc = (VariableComponentKey) integerChecker.getTarget();
final String s = datum.get(vc);
- if (s!=null && s.contains(ReferenceImporterContext.ManyValuesStaticColumn.CSV_CELL_SEPARATOR)) {
+ if (s != null && s.contains(ReferenceImporterContext.ManyValuesStaticColumn.CSV_CELL_SEPARATOR)) {
datum.put(
vc,
String.format("[%s]", s));
@@ -660,7 +660,7 @@ public class OreSiService {
FloatChecker floatChecker = (FloatChecker) lineChecker;
final VariableComponentKey vc = (VariableComponentKey) floatChecker.getTarget();
final String s = datum.get(vc);
- if (s!=null && s.contains(ReferenceImporterContext.ManyValuesStaticColumn.CSV_CELL_SEPARATOR)) {
+ if (s != null && s.contains(ReferenceImporterContext.ManyValuesStaticColumn.CSV_CELL_SEPARATOR)) {
datum.put(
vc,
String.format("[%s]", s));
@@ -669,7 +669,7 @@ public class OreSiService {
StringChecker StringChecker = (StringChecker) lineChecker;
final VariableComponentKey vc = (VariableComponentKey) StringChecker.getTarget();
final String s = datum.get(vc);
- if (s!=null && s.contains(ReferenceImporterContext.ManyValuesStaticColumn.CSV_CELL_SEPARATOR)) {
+ if (s != null && s.contains(ReferenceImporterContext.ManyValuesStaticColumn.CSV_CELL_SEPARATOR)) {
datum.put(
vc,
String.format(
@@ -917,6 +917,21 @@ public class OreSiService {
return lineAsMapToRecordsFn;
}
+ private boolean testHeaderIsExpected(LinkedList<Map.Entry<String, String>> line, String expectedColumn, boolean isAllowUnexpectedColumns) {
+ String header;
+ do {
+ if (line.isEmpty()) {
+ throw new IllegalArgumentException();
+ }
+ Map.Entry<String, String> nextColumn = line.poll();
+ header = nextColumn.getKey();
+ if (!header.equals(expectedColumn) && !isAllowUnexpectedColumns) {
+ throw new IllegalArgumentException(header);
+ }
+ } while (!header.equals(expectedColumn));
+ return true;
+ }
+
/**
* build the function that Dispatch ParsedCsvRow into RowWithData when there are repeatedColumns
*/
@@ -932,10 +947,10 @@ public class OreSiService {
recordPrototype = new LinkedHashMap<>();
for (Configuration.ColumnBindingDescription column : formatDescription.getColumns()) {
Map.Entry<String, String> poll = lineCopy.poll();
- String header = poll.getKey();
- String expected = column.getHeader();
- if (!header.equals(expected)) {
- throw InvalidDatasetContentException.forUnexpectedHeaderColumn(expected, header, formatDescription.getHeaderLine());
+ try {
+ testHeaderIsExpected(lineCopy, column.getHeader(), formatDescription.isAllowUnexpectedColumns());
+ } catch (Exception e) {
+ throw InvalidDatasetContentException.forUnexpectedHeaderColumn(column.getHeader(), e.getMessage(), formatDescription.getHeaderLine());
}
String value = poll.getValue();
recordPrototype.put(column.getBoundTo(), value);
@@ -966,8 +981,10 @@ public class OreSiService {
Pattern pattern = Pattern.compile(headerPattern);
Matcher matcher = pattern.matcher(actualHeader);
boolean matches = matcher.matches();
- if (!matches) {
+ if (!matches && !formatDescription.isAllowUnexpectedColumns()) {
throw InvalidDatasetContentException.forHeaderColumnPatternNotMatching(headerPattern, actualHeader, formatDescription.getHeaderLine());
+ } else if(!matches) {
+ continue;
}
List<Configuration.HeaderPatternToken> tokens = expectedColumn.getTokens();
if (tokens != null) {
--
GitLab
From 07a190e435bbfb0a413856b2c88c496513412801 Mon Sep 17 00:00:00 2001
From: lucile varloteaux <lucile.varloteaux@inrae.fr>
Date: Tue, 11 Jul 2023 15:26:16 +0200
Subject: [PATCH 3/5] =?UTF-8?q?test=20back=20et=20front=20des=20erreurs=20?=
=?UTF-8?q?li=C3=A9es=20avec=20RepetedColumns=20et=20AllowUnexpectedColumn?=
=?UTF-8?q?s?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
---
.../fr/inra/oresing/rest/OreSiService.java | 7 +-
.../java/fr/inra/oresing/rest/Fixtures.java | 43 +++
.../oresing/rest/TestReferencesErrors.java | 162 +++++++++++
.../data/repeatedcolumns/SWC_truncated.csv | 100 +++++++
.../data/repeatedcolumns/agroecosysteme.csv | 4 +
.../data/repeatedcolumns/modalites.csv | 31 ++
.../data/repeatedcolumns/parcelle.csv | 104 +++++++
.../data/repeatedcolumns/repeatedcolumns.yaml | 272 ++++++++++++++++++
...atedcolumnswithallowunexpectedcolumns.yaml | 272 ++++++++++++++++++
.../resources/data/repeatedcolumns/sites.csv | 5 +
.../resources/data/repeatedcolumns/unites.csv | 60 ++++
.../repeatedcolumns/version_de_traitement.csv | 26 ++
ui/src/locales/en.json | 1 +
ui/src/locales/fr.json | 1 +
ui/src/services/ErrorsService.js | 1 +
15 files changed, 1088 insertions(+), 1 deletion(-)
create mode 100644 src/test/resources/data/repeatedcolumns/SWC_truncated.csv
create mode 100644 src/test/resources/data/repeatedcolumns/agroecosysteme.csv
create mode 100644 src/test/resources/data/repeatedcolumns/modalites.csv
create mode 100644 src/test/resources/data/repeatedcolumns/parcelle.csv
create mode 100644 src/test/resources/data/repeatedcolumns/repeatedcolumns.yaml
create mode 100644 src/test/resources/data/repeatedcolumns/repeatedcolumnswithallowunexpectedcolumns.yaml
create mode 100644 src/test/resources/data/repeatedcolumns/sites.csv
create mode 100644 src/test/resources/data/repeatedcolumns/unites.csv
create mode 100644 src/test/resources/data/repeatedcolumns/version_de_traitement.csv
diff --git a/src/main/java/fr/inra/oresing/rest/OreSiService.java b/src/main/java/fr/inra/oresing/rest/OreSiService.java
index b4499d8ee..dc41bf95b 100644
--- a/src/main/java/fr/inra/oresing/rest/OreSiService.java
+++ b/src/main/java/fr/inra/oresing/rest/OreSiService.java
@@ -950,8 +950,13 @@ public class OreSiService {
try {
testHeaderIsExpected(lineCopy, column.getHeader(), formatDescription.isAllowUnexpectedColumns());
} catch (Exception e) {
- throw InvalidDatasetContentException.forUnexpectedHeaderColumn(column.getHeader(), e.getMessage(), formatDescription.getHeaderLine());
+ if (e.getMessage() != null) {
+ throw InvalidDatasetContentException.forUnexpectedHeaderColumn(column.getHeader(), e.getMessage(), formatDescription.getHeaderLine());
+ } else {
+ throw InvalidDatasetContentException.forUnexpectedHeaderColumnsInList(column.getHeader(), line, formatDescription.getHeaderLine());
+ }
}
+ assert poll != null;
String value = poll.getValue();
recordPrototype.put(column.getBoundTo(), value);
}
diff --git a/src/test/java/fr/inra/oresing/rest/Fixtures.java b/src/test/java/fr/inra/oresing/rest/Fixtures.java
index bf11c97de..8bb8b3e93 100644
--- a/src/test/java/fr/inra/oresing/rest/Fixtures.java
+++ b/src/test/java/fr/inra/oresing/rest/Fixtures.java
@@ -241,6 +241,49 @@ public class Fixtures {
return "/data/recursivite/recusivite.yaml";
}
+ public String getRepeatedColumnsWithAllowUnexpectedColumnsApplicationConfigurationResourceName() {
+ return "/data/repeatedcolumns/repeatedcolumnswithallowunexpectedcolumns.yaml";
+ }
+
+ public Map<String, List<String>> getRepeatedColumnsgWithAllowUnexpectedColumnsDataErrorsStringReplace() {
+ Map<String, List<String>> DataTypeErrors = new LinkedHashMap<>();
+ DataTypeErrors.put("unexpectedHeaderColumnsInList", List.of(
+ "\"Nom parcelle\";\"Nom traitement\";\"Date\";\"Time\";\"SWC_1_15\";\"qc\";\"SWC_2_15\";\"qc\";\"SWC_1_45\";\"qc\";\"SWC_2_45\";\"qc\";\"SWC_1_75\";\"qc\";\"SWC_2_75\";\"qc\";\"SWC_1_105\";\"qc\";\"SWC_2_105\";\"qc\";\"SWC_1_135\";\"qc\";\"SWC_2_135\";\"qc\";\"SWC_1_165\";\"qc\";\"SWC_2_165\";\"qc\";\"SWC_1_195\";\"qc\";\"SWC_2_195\";\"qc\";\"SWC_1_235\";\"qc\";\"DateTime\";\"SWC_2_235\";\"qc\"",
+ "\"Nom parcelle\";\"Nom traitement\";\"Dates\";\"Time\";\"SWC_1_15\";\"qc\";\"SWC_2_15\";\"qc\";\"SWC_1_45\";\"qc\";\"SWC_2_45\";\"qc\";\"SWC_1_75\";\"qc\";\"SWC_2_75\";\"qc\";\"SWC_1_105\";\"qc\";\"SWC_2_105\";\"qc\";\"SWC_1_135\";\"qc\";\"SWC_2_135\";\"qc\";\"SWC_1_165\";\"qc\";\"SWC_2_165\";\"qc\";\"SWC_1_195\";\"qc\";\"SWC_2_195\";\"qc\";\"SWC_1_235\";\"qc\";\"DateTime\";\"SWC_2_235\";\"qc\"",
+ "[{\"validationCheckResult\":{\"level\":\"ERROR\",\"message\":\"unexpectedHeaderColumnsInList\",\"messageParams\":{\"actualHeaderColumns\":[{\"Nom parcelle\":\"estreesmons.estreesmons__a06\"},{\"Nom traitement\":\"T3\"},{\"Dates\":\"01/07/2010\"},{\"Time\":\"00:00\"},{\"SWC_1_15\":\"8.50\"},{\"qc\":\"0\"},{\"SWC_2_15\":\"\"},{\"qc\":\"\"},{\"SWC_1_45\":\"16.96\"},{\"qc\":\"0\"},{\"SWC_2_45\":\"\"},{\"qc\":\"\"},{\"SWC_1_75\":\"28.98\"},{\"qc\":\"0\"},{\"SWC_2_75\":\"\"},{\"qc\":\"\"},{\"SWC_1_105\":\"30.14\"},{\"qc\":\"0\"},{\"SWC_2_105\":\"\"},{\"qc\":\"\"},{\"SWC_1_135\":\"32.18\"},{\"qc\":\"0\"},{\"SWC_2_135\":\"\"},{\"qc\":\"\"},{\"SWC_1_165\":\"32.01\"},{\"qc\":\"0\"},{\"SWC_2_165\":\"\"},{\"qc\":\"\"},{\"SWC_1_195\":\"32.18\"},{\"qc\":\"0\"},{\"SWC_2_195\":\"\"},{\"qc\":\"\"},{\"SWC_1_235\":\"35.43\"},{\"qc\":\"0\"},{\"DateTime\":\"01/07/2010\"},{\"SWC_2_235\":\"\"},{\"qc\":\"\"}],\"expectedHeaderColumn\":\"Nom parcelle\"},\"error\":true,\"success\":false},\"lineNumber\":7}]"
+ ));
+ return DataTypeErrors;
+ }
+
+ public String getRepeatedColumnsApplicationConfigurationResourceName() {
+ return "/data/repeatedcolumns/repeatedcolumns.yaml";
+ }
+
+ public Map<String, String> getRepeatedColumnsReferentielOrderFiles() {
+ Map<String, String> referentielFiles = new LinkedHashMap<>();
+ referentielFiles.put("agroecosystemes", "/data/repeatedcolumns/agroecosysteme.csv");
+ referentielFiles.put("sites", "/data/repeatedcolumns/sites.csv");
+ referentielFiles.put("parcelles", "/data/repeatedcolumns/parcelle.csv");
+ referentielFiles.put("unites", "/data/repeatedcolumns/unites.csv");
+ referentielFiles.put("modalites", "/data/repeatedcolumns/modalites.csv");
+ referentielFiles.put("version_de_traitement", "/data/repeatedcolumns/version_de_traitement.csv");
+ return referentielFiles;
+ }
+
+ public String getSWCRepositoryResourceName(String localization) {
+ return String.format("/data/repeatedcolumns/SWC_truncated.csv", localization);
+ }
+
+ public Map<String, List<String>> getRepeatedColumnsDataErrorsStringReplace() {
+ Map<String, List<String>> DataTypeErrors = new LinkedHashMap<>();
+ DataTypeErrors.put("unexpectedHeaderColumnsInList", List.of(
+ "\"Nom parcelle\";\"Nom traitement\";\"Date\";\"Time\";\"SWC_1_15\";\"qc\";\"SWC_2_15\";\"qc\";\"SWC_1_45\";\"qc\";\"SWC_2_45\";\"qc\";\"SWC_1_75\";\"qc\";\"SWC_2_75\";\"qc\";\"SWC_1_105\";\"qc\";\"SWC_2_105\";\"qc\";\"SWC_1_135\";\"qc\";\"SWC_2_135\";\"qc\";\"SWC_1_165\";\"qc\";\"SWC_2_165\";\"qc\";\"SWC_1_195\";\"qc\";\"SWC_2_195\";\"qc\";\"SWC_1_235\";\"qc\";\"DateTime\";\"SWC_2_235\";\"qc\"",
+ "\"Nom parcelle\";\"Nom traitement\";\"Dates\";\"Time\";\"SWC_1_15\";\"qc\";\"SWC_2_15\";\"qc\";\"SWC_1_45\";\"qc\";\"SWC_2_45\";\"qc\";\"SWC_1_75\";\"qc\";\"SWC_2_75\";\"qc\";\"SWC_1_105\";\"qc\";\"SWC_2_105\";\"qc\";\"SWC_1_135\";\"qc\";\"SWC_2_135\";\"qc\";\"SWC_1_165\";\"qc\";\"SWC_2_165\";\"qc\";\"SWC_1_195\";\"qc\";\"SWC_2_195\";\"qc\";\"SWC_1_235\";\"qc\";\"DateTime\";\"SWC_2_235\";\"qc\"",
+ "[{\"validationCheckResult\":{\"level\":\"ERROR\",\"message\":\"unexpectedHeaderColumn\",\"messageParams\":{\"actualHeaderColumn\":\"Nom traitement\",\"expectedHeaderColumn\":\"Nom parcelle\"},\"error\":true,\"success\":false},\"lineNumber\":7}]"
+ ));
+ return DataTypeErrors;
+ }
+
public Map<String, String> getRecursiviteReferentielOrderFiles() {
Map<String, String> referentielFiles = new LinkedHashMap<>();
referentielFiles.put("proprietes_taxon", "/data/recursivite/proprietes_des_taxons.csv");
diff --git a/src/test/java/fr/inra/oresing/rest/TestReferencesErrors.java b/src/test/java/fr/inra/oresing/rest/TestReferencesErrors.java
index b05a90939..724056705 100644
--- a/src/test/java/fr/inra/oresing/rest/TestReferencesErrors.java
+++ b/src/test/java/fr/inra/oresing/rest/TestReferencesErrors.java
@@ -267,4 +267,166 @@ public class TestReferencesErrors {
.andExpect(jsonPath("$.authorizations", Matchers.hasItem(pattern)))
.andExpect(jsonPath("$.id", IsEqual.equalTo(userId.toString())));
}
+
+ @Test
+ public void testRepeatedColumnsWithAllowUnexpectedColumns() throws Exception {
+
+ URL resource = getClass().getResource(fixtures.getRepeatedColumnsWithAllowUnexpectedColumnsApplicationConfigurationResourceName());
+ Cookie recursivityCookie;
+ try (InputStream in = Objects.requireNonNull(resource).openStream()) {
+ MockMultipartFile configuration = new MockMultipartFile("file", "repeatedcolumns.yaml", "text/plain", in);
+ final CreateUserResult recursivityUser = authenticationService.createUser("repeatedcolumns", "xxxxxxxx", "repeatedcolumns@inrae.fr");
+ setToActive(recursivityUser.getUserId());
+ UUID recursivityUserId = recursivityUser.getUserId();
+ addUserRightCreateApplication(recursivityUserId, "repeatedcolumns");
+ recursivityCookie = mockMvc.perform(post("/api/v1/login")
+ .param("login", "repeatedcolumns")
+ .param("password", "xxxxxxxx"))
+ .andReturn().getResponse().getCookie(AuthHelper.JWT_COOKIE_NAME);
+
+ String response = mockMvc.perform(MockMvcRequestBuilders.multipart("/api/v1/applications/repeatedcolumns")
+ .file(configuration)
+ .cookie(recursivityCookie))
+ .andExpect(status().isCreated())
+ .andExpect(jsonPath("$.id", IsNull.notNullValue()))
+ .andReturn().getResponse().getContentAsString();
+
+ JsonPath.parse(response).read("$.id");
+
+
+ response = mockMvc.perform(MockMvcRequestBuilders.get("/api/v1/applications/repeatedcolumns")
+ .param("filter", "ALL")
+ .cookie(recursivityCookie))
+ .andExpect(status().is2xxSuccessful())
+ .andReturn().getResponse().getContentAsString();
+
+ }
+
+ String response;
+ for (Map.Entry<String, String> e : fixtures.getRepeatedColumnsReferentielOrderFiles().entrySet()) {
+ try (InputStream refStream = getClass().getResourceAsStream(e.getValue())) {
+ MockMultipartFile refFile = new MockMultipartFile("file", e.getValue(), "text/plain", refStream);
+
+ response = mockMvc.perform(MockMvcRequestBuilders.multipart("/api/v1/applications/repeatedcolumns/references/{refType}", e.getKey())
+ .file(refFile)
+ .cookie(recursivityCookie))
+ .andExpect(status().isCreated())
+ .andExpect(jsonPath("$.id", IsNull.notNullValue()))
+ .andReturn().getResponse().getContentAsString();
+
+ JsonPath.parse(response).read("$.id");
+ }
+ }
+ // test repository
+ String localization = "estreesmons";
+ URL resources = getClass().getResource(fixtures.getSWCRepositoryResourceName(localization));
+ StringBuilder textBuild = new StringBuilder();
+ try (InputStream refStream = Objects.requireNonNull(resources).openStream()) {
+ try (Reader reader = new BufferedReader(new InputStreamReader
+ (refStream, Charset.forName(StandardCharsets.UTF_8.name())))) {
+ int c = 0;
+ while ((c = reader.read()) != -1) {
+ textBuild.append((char) c);
+ }
+ }
+ }
+ String monRepositoryCSV = textBuild.toString();
+ for (Map.Entry<String, List<String>> e : fixtures.getRepeatedColumnsgWithAllowUnexpectedColumnsDataErrorsStringReplace().entrySet()) {
+ String textCsvModify = monRepositoryCSV.replace(e.getValue().get(0), e.getValue().get(1));
+ try (InputStream refStream = new ByteArrayInputStream(textCsvModify.getBytes(StandardCharsets.UTF_8))) {
+ MockMultipartFile refFile = new MockMultipartFile("file", "SWC_truncated.csv", "text/plain", refStream);
+ log.info(e.getKey());
+ response = mockMvc.perform(MockMvcRequestBuilders.multipart("/api/v1/applications/repeatedcolumns/data/SWC")
+ .file(refFile)
+ .cookie(recursivityCookie))
+ .andExpect(MockMvcResultMatchers.status().is4xxClientError())
+ .andReturn().getResponse().getContentAsString();
+
+ Assert.assertEquals(e.getValue().get(2), response);
+ responses.put(e.getKey(), response);
+ }
+ }
+ }
+
+ @Test
+ public void testRepeatedColumns() throws Exception {
+
+ URL resource = getClass().getResource(fixtures.getRepeatedColumnsApplicationConfigurationResourceName());
+ Cookie recursivityCookie;
+ try (InputStream in = Objects.requireNonNull(resource).openStream()) {
+ MockMultipartFile configuration = new MockMultipartFile("file", "repeatedcolumns.yaml", "text/plain", in);
+ final CreateUserResult recursivityUser = authenticationService.createUser("repeatedcolumns", "xxxxxxxx", "repeatedcolumns@inrae.fr");
+ setToActive(recursivityUser.getUserId());
+ UUID recursivityUserId = recursivityUser.getUserId();
+ addUserRightCreateApplication(recursivityUserId, "repeatedcolumns");
+ recursivityCookie = mockMvc.perform(post("/api/v1/login")
+ .param("login", "repeatedcolumns")
+ .param("password", "xxxxxxxx"))
+ .andReturn().getResponse().getCookie(AuthHelper.JWT_COOKIE_NAME);
+
+ String response = mockMvc.perform(MockMvcRequestBuilders.multipart("/api/v1/applications/repeatedcolumns")
+ .file(configuration)
+ .cookie(recursivityCookie))
+ .andExpect(status().isCreated())
+ .andExpect(jsonPath("$.id", IsNull.notNullValue()))
+ .andReturn().getResponse().getContentAsString();
+
+ JsonPath.parse(response).read("$.id");
+
+
+ response = mockMvc.perform(MockMvcRequestBuilders.get("/api/v1/applications/repeatedcolumns")
+ .param("filter", "ALL")
+ .cookie(recursivityCookie))
+ .andExpect(status().is2xxSuccessful())
+ .andReturn().getResponse().getContentAsString();
+
+ }
+
+ String response;
+ for (Map.Entry<String, String> e : fixtures.getRepeatedColumnsReferentielOrderFiles().entrySet()) {
+ try (InputStream refStream = getClass().getResourceAsStream(e.getValue())) {
+ MockMultipartFile refFile = new MockMultipartFile("file", e.getValue(), "text/plain", refStream);
+
+ response = mockMvc.perform(MockMvcRequestBuilders.multipart("/api/v1/applications/repeatedcolumns/references/{refType}", e.getKey())
+ .file(refFile)
+ .cookie(recursivityCookie))
+ .andExpect(status().isCreated())
+ .andExpect(jsonPath("$.id", IsNull.notNullValue()))
+ .andReturn().getResponse().getContentAsString();
+
+ JsonPath.parse(response).read("$.id");
+ }
+ }
+ // test repository
+ String localization = "estreesmons";
+ URL resources = getClass().getResource(fixtures.getSWCRepositoryResourceName(localization));
+ StringBuilder textBuild = new StringBuilder();
+ try (InputStream refStream = Objects.requireNonNull(resources).openStream()) {
+ try (Reader reader = new BufferedReader(new InputStreamReader
+ (refStream, Charset.forName(StandardCharsets.UTF_8.name())))) {
+ int c = 0;
+ while ((c = reader.read()) != -1) {
+ textBuild.append((char) c);
+ }
+ }
+ }
+ String monRepositoryCSV = textBuild.toString();
+ for (Map.Entry<String, List<String>> e : fixtures.getRepeatedColumnsDataErrorsStringReplace().entrySet()) {
+ String textCsvModify = monRepositoryCSV.replace(e.getValue().get(0), e.getValue().get(1));
+ try (InputStream refStream = new ByteArrayInputStream(textCsvModify.getBytes(StandardCharsets.UTF_8))) {
+ MockMultipartFile refFile = new MockMultipartFile("file", "SWC_truncated.csv", "text/plain", refStream);
+ log.info(e.getKey());
+ response = mockMvc.perform(MockMvcRequestBuilders.multipart("/api/v1/applications/repeatedcolumns/data/SWC")
+ .file(refFile)
+ .cookie(recursivityCookie))
+ .andExpect(MockMvcResultMatchers.status().is4xxClientError())
+ .andReturn().getResponse().getContentAsString();
+
+ Assert.assertEquals(e.getValue().get(2), response);
+ responses.put(e.getKey(), response);
+ }
+ }
+ }
+
+
}
\ No newline at end of file
diff --git a/src/test/resources/data/repeatedcolumns/SWC_truncated.csv b/src/test/resources/data/repeatedcolumns/SWC_truncated.csv
new file mode 100644
index 000000000..be6a95120
--- /dev/null
+++ b/src/test/resources/data/repeatedcolumns/SWC_truncated.csv
@@ -0,0 +1,100 @@
+"Type de données";"SWC";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
+"Site d'étude";"Estrées-Mons";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
+"Date début";"01/07/2010";"00:00:00";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
+"Date fin";"31/12/2010";"23:30:00";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
+"Commentaire";"Humidité volumique du sol en %";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
+;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
+"Nom parcelle";"Nom traitement";"Date";"Time";"SWC_1_15";"qc";"SWC_2_15";"qc";"SWC_1_45";"qc";"SWC_2_45";"qc";"SWC_1_75";"qc";"SWC_2_75";"qc";"SWC_1_105";"qc";"SWC_2_105";"qc";"SWC_1_135";"qc";"SWC_2_135";"qc";"SWC_1_165";"qc";"SWC_2_165";"qc";"SWC_1_195";"qc";"SWC_2_195";"qc";"SWC_1_235";"qc";"DateTime";"SWC_2_235";"qc"
+"Valeur minimale";;;;"0";;"0";;"0";;"0";;"0";;"0";;"0";;"0";;"0";;"0";;"0";;"0";;"0";;"0";;"0";;;"0";
+"Valeur maximale";;;;"100";;"100";;"100";;"100";;"100";;"100";;"100";;"100";;"100";;"100";;"100";;"100";;"100";;"100";;"100";;;"100";
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"00:00";"8.50";"0";;;"16.96";"0";;;"28.98";"0";;;"30.14";"0";;;"32.18";"0";;;"32.01";"0";;;"32.18";"0";;;"35.43";"0";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"00:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"01:00";"8.47";"0";;;"16.96";"0";;;"28.98";"0";;;"30.14";"0";;;"32.15";"0";;;"31.98";"0";;;"32.18";"0";;;"35.43";"0";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"01:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"02:00";"8.40";"0";;;"16.99";"0";;;"28.98";"0";;;"30.14";"0";;;"32.18";"0";;;"31.98";"0";;;"32.18";"0";;;"35.43";"0";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"02:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"03:00";"8.37";"0";;;"17.01";"0";;;"28.95";"0";;;"30.14";"0";;;"32.18";"0";;;"31.98";"0";;;"32.18";"0";;;"35.43";"0";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"03:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"04:00";"8.40";"0";;;"16.99";"0";;;"28.95";"0";;;"30.14";"0";;;"32.18";"0";;;"31.98";"0";;;"32.18";"0";;;"35.43";"0";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"04:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"05:00";"8.34";"0";;;"16.99";"0";;;"28.95";"0";;;"30.14";"0";;;"32.12";"0";;;"31.98";"0";;;"32.18";"0";;;"35.43";"0";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"05:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"06:00";"8.37";"0";;;"16.99";"0";;;"28.95";"0";;;"30.10";"0";;;"32.15";"0";;;"31.98";"0";;;"32.18";"0";;;"35.43";"0";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"06:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"07:00";"8.37";"0";;;"17.03";"0";;;"28.95";"0";;;"30.31";"0";;;"32.12";"0";;;"31.98";"0";;;"32.18";"0";;;"35.43";"0";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"07:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"08:00";"8.37";"0";;;"17.03";"0";;;"28.95";"0";;;"30.23";"0";;;"32.15";"0";;;"31.98";"0";;;"32.18";"0";;;"35.43";"0";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"08:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"09:00";"8.44";"0";;;"17.03";"0";;;"28.92";"0";;;"30.27";"0";;;"32.12";"0";;;"31.98";"0";;;"32.18";"0";;;"35.43";"0";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"09:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"10:00";"8.47";"0";;;"16.99";"0";;;"28.92";"0";;;"30.36";"0";;;"32.15";"0";;;"32.04";"0";;;"32.18";"0";;;"35.43";"0";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"10:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"11:00";"8.50";"0";;;"16.99";"0";;;"28.89";"0";;;"30.27";"0";;;"32.15";"0";;;"32.04";"0";;;"32.18";"0";;;"35.43";"0";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"11:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"12:00";"8.50";"0";;;"16.94";"0";;;"28.89";"0";;;"30.27";"0";;;"32.15";"0";;;"32.04";"0";;;"32.18";"0";;;"35.43";"0";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"12:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"13:00";"8.57";"0";;;"16.89";"0";;;"28.86";"0";;;"30.27";"0";;;"32.15";"0";;;"32.04";"0";;;"32.12";"0";;;"35.43";"0";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"13:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"14:00";"8.64";"0";;;"16.87";"0";;;"28.86";"0";;;"30.27";"0";;;"32.15";"0";;;"32.04";"0";;;"32.18";"0";;;"35.43";"0";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"14:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"15:00";"8.60";"0";;;"16.80";"0";;;"28.80";"0";;;"30.18";"0";;;"32.12";"0";;;"32.04";"0";;;"32.12";"0";;;"35.43";"0";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"15:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"16:00";"8.64";"0";;;"16.78";"0";;;"28.80";"0";;;"30.23";"0";;;"32.12";"0";;;"32.04";"0";;;"32.12";"0";;;"35.43";"0";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"16:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"17:00";"8.67";"0";;;"16.73";"0";;;"28.77";"0";;;"30.18";"0";;;"32.08";"0";;;"32.04";"0";;;"32.12";"0";;;"35.43";"0";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"17:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"18:00";"8.64";"0";;;"16.71";"0";;;"28.71";"0";;;"30.18";"0";;;"32.08";"0";;;"32.01";"0";;;"32.12";"0";;;"35.43";"0";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"18:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"19:00";"8.54";"0";;;"16.68";"0";;;"28.71";"0";;;"30.18";"0";;;"32.12";"0";;;"32.01";"0";;;"32.12";"0";;;"35.43";"0";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"19:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"20:00";"8.50";"0";;;"16.66";"0";;;"28.65";"0";;;"30.18";"0";;;"32.08";"0";;;"32.01";"0";;;"32.12";"0";;;"35.43";"0";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"20:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"21:00";"8.47";"0";;;"16.66";"0";;;"28.65";"0";;;"30.18";"0";;;"32.12";"0";;;"32.01";"0";;;"32.12";"0";;;"35.43";"0";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"21:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"22:00";"8.44";"0";;;"16.68";"0";;;"28.65";"0";;;"30.18";"0";;;"32.12";"0";;;"32.01";"0";;;"32.12";"0";;;"35.49";"0";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"22:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"23:00";"8.34";"0";;;"16.71";"0";;;"28.65";"0";;;"30.18";"0";;;"32.12";"0";;;"32.01";"0";;;"32.12";"0";;;"35.43";"0";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"01/07/2010";"23:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"01/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"00:00";"8.34";"0";;;"16.75";"0";;;"28.65";"0";;;"30.18";"0";;;"32.08";"0";;;"32.01";"0";;;"32.12";"0";;;"35.43";"0";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"00:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"01:00";"8.30";"0";;;"16.78";"0";;;"28.65";"0";;;"30.27";"0";;;"32.08";"0";;;"32.01";"0";;;"32.24";"0";;;"35.37";"0";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"01:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"02:00";"8.34";"0";;;"16.75";"0";;;"28.62";"0";;;"30.27";"0";;;"32.08";"0";;;"32.01";"0";;;"32.12";"0";;;"35.37";"0";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"02:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"03:00";"8.27";"0";;;"16.75";"0";;;"28.62";"0";;;"30.18";"0";;;"32.08";"0";;;"32.01";"0";;;"32.12";"0";;;"35.37";"0";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"03:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"04:00";"8.30";"0";;;"16.75";"0";;;"28.62";"0";;;"30.18";"0";;;"32.08";"0";;;"32.01";"0";;;"32.24";"0";;;"35.37";"0";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"04:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"05:00";"8.24";"0";;;"16.80";"0";;;"28.62";"0";;;"29.97";"0";;;"32.05";"0";;;"32.01";"0";;;"32.24";"0";;;"35.49";"0";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"05:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"06:00";"8.24";"0";;;"16.75";"0";;;"28.62";"0";;;"30.14";"0";;;"32.08";"0";;;"31.98";"0";;;"32.24";"0";;;"35.37";"0";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"06:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"07:00";"8.27";"0";;;"16.80";"0";;;"28.62";"0";;;"30.06";"0";;;"32.08";"0";;;"31.98";"0";;;"32.24";"0";;;"35.37";"0";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"07:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"08:00";"8.24";"0";;;"16.80";"0";;;"28.59";"0";;;"29.97";"0";;;"32.08";"0";;;"31.98";"0";;;"32.24";"0";;;"35.37";"0";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"08:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"09:00";"8.24";"0";;;"16.78";"0";;;"28.59";"0";;;"29.97";"0";;;"32.08";"0";;;"31.98";"0";;;"32.24";"0";;;"35.37";"0";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"09:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"10:00";"8.27";"0";;;"16.73";"0";;;"28.56";"0";;;"29.88";"0";;;"32.05";"0";;;"31.98";"0";;;"32.24";"0";;;"35.43";"0";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"10:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"11:00";"8.34";"0";;;"16.73";"0";;;"28.56";"0";;;"29.88";"0";;;"32.05";"0";;;"32.01";"0";;;"32.24";"0";;;"35.37";"0";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"11:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"12:00";"8.34";"0";;;"16.71";"0";;;"28.53";"0";;;"29.88";"0";;;"32.05";"0";;;"32.01";"0";;;"32.18";"0";;;"35.37";"0";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"12:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"13:00";"8.40";"0";;;"16.64";"0";;;"28.50";"0";;;"29.88";"0";;;"32.05";"0";;;"32.01";"0";;;"32.05";"0";;;"35.43";"0";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"13:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"14:00";"8.47";"0";;;"16.64";"0";;;"28.53";"0";;;"29.88";"0";;;"32.05";"0";;;"32.01";"0";;;"32.18";"0";;;"35.43";"0";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"14:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"15:00";"8.54";"0";;;"16.59";"0";;;"28.50";"0";;;"29.88";"0";;;"32.05";"0";;;"32.01";"0";;;"32.05";"0";;;"35.43";"0";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"15:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"16:00";"8.50";"0";;;"16.54";"0";;;"28.47";"0";;;"29.88";"0";;;"32.05";"0";;;"32.01";"0";;;"32.05";"0";;;"35.43";"0";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"16:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"17:00";"8.50";"0";;;"16.52";"0";;;"28.41";"0";;;"30.06";"0";;;"32.05";"0";;;"32.01";"0";;;"32.05";"0";;;"35.43";"0";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"17:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"18:00";"8.54";"0";;;"16.52";"0";;;"28.41";"0";;;"29.88";"0";;;"32.05";"0";;;"31.95";"0";;;"32.05";"0";;;"35.43";"0";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"18:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"02/07/2010";;
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+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"20:30";"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";;;"-9999";"2";"02/07/2010";;
+"estreesmons.estreesmons__a06";"T3";"02/07/2010";"21:00";"8.27";"0";;;"16.50";"0";;;"28.35";"0";;;"29.97";"0";;;"32.02";"0";;;"31.98";"0";;;"32.05";"0";;;"35.43";"0";"02/07/2010";;
diff --git a/src/test/resources/data/repeatedcolumns/agroecosysteme.csv b/src/test/resources/data/repeatedcolumns/agroecosysteme.csv
new file mode 100644
index 000000000..3c277b0ad
--- /dev/null
+++ b/src/test/resources/data/repeatedcolumns/agroecosysteme.csv
@@ -0,0 +1,4 @@
+Agroécosystème_key;Agroécosystème_fr;Agroécosystème_en;region;Département
+grandes_cultures_et_cultures_dediees_a_la_production_de_biomasse;grandes_cultures_et_cultures_dediees_a_la_production_de_biomasse;grandes_cultures_et_cultures_dediees_a_la_production_de_biomasse;Picardie;Somme
+prairies_permanentes;prairies_permanentes;prairies_permanentes;Auvergne;Puy-de-Dôme
+rotation_prairie_culture;rotation_prairie_culture;rotation_prairie_culture;Poitou-Charentes;Vienne
diff --git a/src/test/resources/data/repeatedcolumns/modalites.csv b/src/test/resources/data/repeatedcolumns/modalites.csv
new file mode 100644
index 000000000..8479fde32
--- /dev/null
+++ b/src/test/resources/data/repeatedcolumns/modalites.csv
@@ -0,0 +1,31 @@
+Variable de forcage;code;nom_fr;nom_en;description_fr;description_en
+chargement;C+;fort;strong;fort;fort
+chargement;C-;faible;low;faible;faible
+fertilisation;F-;Bas intrants azotés;Low nitrogen inputs;Fertilisation réduite;Fertilisation réduite
+fertilisation;F0;nulle;no;Aucune fertilisation;Aucune fertilisation
+fertilisation;FC;classique;classic;Fertilisation classique;Fertilisation classique
+fertilisation;FNPK;NPK;NPK;Fertilisation Phosphore + Potassium;Fertilisation Phosphore + Potassium
+fertilisation;FPK;PK;PK;Fertilisation Azote + Phosphore + Potassium;Fertilisation Azote + Phosphore + Potassium
+gestion_des_residus_de_culture;GE;Exportation;export;Exportation;Exportation
+gestion_des_residus_de_culture;GR;Restitution;restitution;Restitution;Restitution
+pature;PC;continue;continuous;pâture en continue;pâture en continue
+pature;PR;rotatif;rotary;pâture rotative;pâture rotative
+rotation;R1;PT>20;TP>20;témoins prairie temporaire;témoins prairie temporaire
+rotation;R2;PT, PT, PT, PT, PT, PT, maïs, blé, orge;TP, TP, TP, TP, TP, TP, corn, wheat, barley;Alternance de cultures avec une prairies temporaire sur 6 ans;Alternance de cultures avec une prairies temporaire sur 6 ans
+rotation;R3;maïs, blé, orge, PT, PT, PT;corn, wheat, barley, TP, TP, TP;Alternance de cultures avec une prairies temporaire sur 3 ans;Alternance de cultures avec une prairies temporaire sur 3 ans
+rotation;R4;maïs, blé, orge;corn, wheat, barley;Cultures en rotation : maïs, blé, orge;Cultures en rotation : maïs, blé, orge
+rotation;R5;pois, colza, blé d'hiver, orge, maïs, blé d'hiver;peas / rape / winter wheat / winter barley / corn / winter wheat;Succession : Pois (protéagineux de printemps) / Colza d'hiver / Blé Tendre d'Hiver / Orge de Printemps / Maïs / Blé Tendre d'Hiver;Succession : Pois (protéagineux de printemps) / Colza d'hiver / Blé Tendre d'Hiver / Orge de Printemps / Maïs / Blé Tendre d'Hiver
+rotation;R6;pois, blé d'hiver, colza, blé d'hiver, switchgrass , switchgrass, switchgrass, switchgrass;peas, winter wheat, oilseed rape, winter wheat, switchgrass , Swtichgrass, Switchgrass, Switchgrass;Succession : Pois (protéagineux de printemps)/ Blé d'hiver / Colza d'hiver / Blé d'hiver / Switchgrass / Switchgrass / Switchgrass / Switchgrass;Succession : Pois (protéagineux de printemps)/ Blé d'hiver / Colza d'hiver / Blé d'hiver / Switchgrass / Switchgrass / Switchgrass / Switchgrass
+rotation;R7;switchgrass;switchgrass;Succession : Switchgrass / Switchgrass / Switchgrass / Switchgrass;Succession : Switchgrass / Switchgrass / Switchgrass / Switchgrass
+type_d_animaux;TAB;bovin;cattle;bovin;bovin
+type_d_animaux;TAO;ovin;sheep;ovin;ovin
+type_d_animaux;TAVL;vache laitière;dairy cow;vache laitière;vache laitière
+utilisation;U0;Sol nu;bare soil;Maintient du sol en sol nu;Maintient du sol en sol nu
+utilisation;UA;Abandon;abandonment;Pas de traitement;Pas de traitement
+utilisation;UC;Culture;farming;Utilisation du sol en culture lors d'une rotation;Utilisation du sol en culture lors d'une rotation
+utilisation;UF;Fauche;reaping;Prairies fauchées;Prairies fauchées
+utilisation;UP;Pâture;pasture;Prairies pâturées;Prairies pâturées
+travail_du_sol;W0;Non travail du sol;No tillage;Non travail du sol;Non travail du sol
+travail_du_sol;WL;Labour;plowing;Labour;Labour
+travail_du_sol;WLO;Labour occasionnel;Labour occasional;Labour occasionnel;Labour occasionnel
+travail_du_sol;WTS;Travail superficiel;tillage;Travail superficiel;Travail superficiel
diff --git a/src/test/resources/data/repeatedcolumns/parcelle.csv b/src/test/resources/data/repeatedcolumns/parcelle.csv
new file mode 100644
index 000000000..26ad84974
--- /dev/null
+++ b/src/test/resources/data/repeatedcolumns/parcelle.csv
@@ -0,0 +1,104 @@
+site;bloc;répétition;nom de la parcelle_key;nom de la parcelle_fr;nom de la parcelle_en;surface;date de création;commentaire_fr;commentaire_en
+estreesmons;1;;a01;a01;a01;5040.0;01/03/2008;;
+estreesmons;1;;a02;a02;a02;4410.0;01/03/2008;;
+estreesmons;1;;a03;a03;a03;4410.0;01/03/2008;;
+estreesmons;1;;a04;a04;a04;4410.0;01/03/2008;;
+estreesmons;1;;a05;a05;a05;4410.0;01/03/2008;;
+estreesmons;1;;a06;a06;a06;5040.0;01/03/2008;;
+estreesmons;2;;a07;a07;a07;5040.0;01/03/2008;;
+estreesmons;2;;a08;a08;a08;3570.0;01/03/2008;;
+estreesmons;2;;a09;a09;a09;3570.0;01/03/2008;;
+estreesmons;2;;a10;a10;a10;3570.0;01/03/2008;;
+estreesmons;2;;a11;a11;a11;3570.0;01/03/2008;;
+estreesmons;2;;a12;a12;a12;4080.0;01/03/2008;;
+estreesmons;3;;a13;a13;a13;4080.0;01/03/2008;;
+estreesmons;3;;a14;a14;a14;3570.0;01/03/2008;;
+estreesmons;3;;a15;a15;a15;3570.0;01/03/2008;;
+estreesmons;3;;a16;a16;a16;3570.0;01/03/2008;;
+estreesmons;3;;a17;a17;a17;3570.0;01/03/2008;;
+estreesmons;3;;a18;a18;a18;4080.0;01/03/2008;;
+estreesmons;4;;a19;a19;a19;4080.0;01/03/2008;;
+estreesmons;4;;a20;a20;a20;3570.0;01/03/2008;;
+estreesmons;4;;a21;a21;a21;3570.0;01/03/2008;;
+estreesmons;4;;a22;a22;a22;3570.0;01/03/2008;;
+estreesmons;4;;a23;a23;a23;3570.0;01/03/2008;;
+estreesmons;4;;a24;a24;a24;4080.0;01/03/2008;;
+estreesmons;1;;a25;a25;a25;13800.0;01/03/2008;;
+estreesmons;1;;sn25;sn25;sn25;139.0;01/03/2008;sol nu;sol nu
+estreesmons;1;;a26;a26;a26;12000.0;01/03/2008;;
+estreesmons;1;;sn26;sn26;sn26;136.0;01/03/2008;sol nu;sol nu
+estreesmons;1;;a27;a27;a27;42000.0;01/03/2008;Equipée pour mesures de gaz par tours à flux;Equipée pour mesures de gaz par tours à flux
+estreesmons;1;;a28;a28;a28;42000.0;01/03/2008;Equipée pour mesures de gaz par tours à flux;Equipée pour mesures de gaz par tours à flux
+estreesmons;1;;a29;a29;a29;4176.0;15/07/2015;;
+estreesmons;1;;a30;a30;a30;4176.0;15/07/2015;;
+estreesmons;bio;;a31;a31;a31;4176.0;15/07/2015;;
+estreesmons;bio;;a32;a32;a32;4176.0;15/07/2015;;
+estreesmons;bio;;a33;a33;a33;4176.0;15/07/2015;;
+estreesmons;bio;;a34;a34;a34;3600.0;15/07/2015;;
+estreesmons;1;;A06_SN;A06_SN;A06_SN;12.0;15/07/2015;sol nu;sol nu
+estreesmons;2;;A07_SN;A07_SN;A07_SN;12.0;15/07/2015;sol nu;sol nu
+estreesmons;3;;A17_SN;A17_SN;A17_SN;12.0;15/07/2015;sol nu;sol nu
+estreesmons;4;;A23_SN;A23_SN;A23_SN;12.0;15/07/2015;sol nu;sol nu
+laqueuille;;;1;1;1;28200.0;01/05/2002;Laq-int grande parcelle, sans répétition;Laq-int grande parcelle, sans répétition
+laqueuille;;;2;2;2;38400.0;01/05/2002;Laq-ext grande parcelle, sans répétition;Laq-ext grande parcelle, sans répétition
+lusignan;1;;1;1;1;3830.0;15/04/2005;rep 1;rep 1
+lusignan;1;;2;2;2;3890.0;15/04/2005;rep 1;rep 1
+lusignan;1;;3;3;3;4540.0;15/04/2005;rep 1;rep 1
+lusignan;1;;4;4;4;3890.0;15/04/2005;rep 1;rep 1
+lusignan;1;;5;5;5;3890.0;15/04/2005;rep 1;rep 1
+lusignan;2;;6;6;6;3890.0;15/04/2005;rep 2;rep 2
+lusignan;2;;7;7;7;3890.0;15/04/2005;rep 2;rep 2
+lusignan;2;;8;8;8;4480.0;15/04/2005;rep 2;rep 2
+lusignan;2;;9;9;9;3890.0;15/04/2005;rep 2;rep 2
+lusignan;2;;10;10;10;3890.0;15/04/2005;rep 2;rep 2
+lusignan;3;;11;11;11;3830.0;15/04/2005;rep 3;rep 3
+lusignan;3;;12;12;12;40.0;15/04/2005;rep 3;rep 3
+lusignan;3;;13;13;13;3960.0;15/04/2005;rep 3;rep 3
+lusignan;3;;14;14;14;3960.0;15/04/2005;rep 3;rep 3
+lusignan;3;;15;15;15;3960.0;15/04/2005;rep 4;rep 4
+lusignan;4;;16;16;16;3960.0;15/04/2005;rep 4;rep 4
+lusignan;4;;17;17;17;3960.0;15/04/2005;rep 4;rep 4
+lusignan;4;;18;18;18;3960.0;15/04/2005;rep 4;rep 4
+lusignan;4;;19;19;19;3960.0;15/04/2005;rep 4;rep 4
+lusignan;4;;20;20;20;3830.0;15/04/2005;rep 4;rep 4
+lusignan;;;21;21;21;28320.0;15/04/2005;grande parcelle P1;grande parcelle P1
+lusignan;;;22;22;22;29770.0;15/04/2005;grande parcelle P2;grande parcelle P2
+lusignan;;;23;23;23;31510.0;15/04/2005;grande parcelle P3;grande parcelle P3
+lusignan;;;24;24;24;3130.0;15/04/2005;grande parcelle P4;grande parcelle P4
+lusignan;1;;25;25;25;540.0;15/04/2005;sol nu 1;sol nu 1
+lusignan;2;;26;26;26;540.0;15/04/2005;sol nu 2;sol nu 2
+lusignan;3;;27;27;27;540.0;15/04/2005;sol nu 3;sol nu 3
+lusignan;4;;28;28;28;540.0;15/04/2005;sol nu 4;sol nu 4
+lusignan;1;;29;29;29;540.0;15/04/2005;sol nu 5;sol nu 5
+lusignan;1;;30;30;30;540.0;15/04/2005;sol nu 6;sol nu 6
+theix;1;1;1;1;1;2200.0;01/01/2005;blatière;blatière
+theix;1;1;2;2;2;2200.0;01/01/2005;blatière;blatière
+theix;1;1;3;3;3;1100.0;01/01/2005;blatière;blatière
+theix;1;1;4;4;4;510.0;01/01/2005;blatière;blatière
+theix;1;1;5;5;5;640.0;01/01/2005;blatière;blatière
+theix;1;1;6;6;6;390.0;01/01/2005;blatière;blatière
+theix;1;1;7;7;7;440.0;01/01/2005;blatière;blatière
+theix;1;2;8;8;8;2200.0;01/01/2005;blatière;blatière
+theix;1;2;9;9;9;2200.0;01/01/2005;blatière;blatière
+theix;1;2;10;10;10;1100.0;01/01/2005;blatière;blatière
+theix;1;2;11;11;11;390.0;01/01/2005;blatière;blatière
+theix;1;2;12;12;12;390.0;01/01/2005;blatière;blatière
+theix;1;2;13;13;13;390.0;01/01/2005;blatière;blatière
+theix;1;2;14;14;14;390.0;01/01/2005;blatière;blatière
+theix;2;1;15;15;15;2200.0;01/01/2005;Moine;Moine
+theix;2;1;16;16;16;1100.0;01/01/2005;Moine;Moine
+theix;2;1;17;17;17;2200.0;01/01/2005;Moine;Moine
+theix;2;1;18;18;18;470.0;01/01/2005;Moine;Moine
+theix;2;1;19;19;19;470.0;01/01/2005;Moine;Moine
+theix;2;1;20;20;20;470.0;01/01/2005;Moine;Moine
+theix;2;1;21;21;21;470.0;01/01/2005;Moine;Moine
+theix;2;2;22;22;22;2200.0;01/01/2005;Moine;Moine
+theix;2;2;23;23;23;2200.0;01/01/2005;Moine;Moine
+theix;2;2;24;24;24;1100.0;01/01/2005;Moine;Moine
+theix;2;2;25;25;25;390.0;01/01/2005;Moine;Moine
+theix;2;2;26;26;26;390.0;01/01/2005;Moine;Moine
+theix;2;2;27;27;27;390.0;01/01/2005;Moine;Moine
+theix;2;2;28;28;28;390.0;01/01/2005;Moine;Moine
+theix;1;;29;29;29;39.0;01/01/2005;;
+theix;2;;30;30;30;39.0;01/01/2005;;
+theix;1;;station_meteo;station_meteo;station_meteo;120.0;;parcelle station agroclim;parcelle station agroclim
diff --git a/src/test/resources/data/repeatedcolumns/repeatedcolumns.yaml b/src/test/resources/data/repeatedcolumns/repeatedcolumns.yaml
new file mode 100644
index 000000000..4267fdacd
--- /dev/null
+++ b/src/test/resources/data/repeatedcolumns/repeatedcolumns.yaml
@@ -0,0 +1,272 @@
+version: 1
+application:
+ name: repeatedcolumns
+ version: 1
+references:
+ agroecosystemes :
+ keyColumns: [Agroécosystème_key]
+ columns:
+ Agroécosystème_key:
+ Agroécosystème_fr:
+ Agroécosystème_en:
+ region:
+ Département:
+ sites:
+ keyColumns: [nom du site_key]
+ validations:
+ agroecosystemRef:
+ internationalizationName:
+ fr: "référence à l'agroécosystème"
+ checker:
+ name: Reference
+ params:
+ refType: agroecosystemes
+ columns: [ Agroécosystème ]
+ checkDateMiseEnService:
+ internationalizationName:
+ fr: "validation de date"
+ checker:
+ name: Date
+ params:
+ pattern : "dd/MM/yyyy"
+ columns: [ "date mise en service du dispositif" ]
+ columns:
+ Agroécosystème:
+ nom du site_key:
+ nom du site_fr:
+ nom du site_en:
+ ville:
+ adresse:
+ cordonnées du dispositif:
+ milieu:
+ climat:
+ pluviométrie moyenne (mm):
+ température moyenne (°C):
+ vent dominant:
+ vitesse moyenne du vent (km/h):
+ type de sol:
+ profondeur moyenne du sol (m):
+ altitude moyenne (m):
+ date mise en service du dispositif:
+ parcelles:
+ keyColumns: [site,nom de la parcelle_key]
+ columns:
+ site:
+ bloc:
+ répétition:
+ nom de la parcelle_key:
+ nom de la parcelle_fr:
+ nom de la parcelle_en:
+ surface:
+ date de création:
+ commentaire_fr:
+ commentaire_en:
+ blocs:
+ validations:
+ creationDate:
+ internationalizationName:
+ fr: "date de création"
+ checker:
+ name: Date
+ params:
+ pattern: dd/MM/yyyy
+ columns: [ date creation ]
+ keyColumns: [site,nom_du_bloc,répétition]
+ columns:
+ site:
+ nom_du_bloc:
+ répétition:
+ date creation:
+ decription_fr:
+ description_en:
+ unites:
+ keyColumns: [nom_key]
+ columns:
+ code_key:
+ code_fr:
+ code_en:
+ nom_key:
+ nom_fr:
+ nom_en:
+ modalites:
+ internationalizedColumns:
+ nom_fr:
+ fr: nom_fr
+ en: nom_en
+ internationalizationDisplay:
+ pattern:
+ fr: '{nom_fr} ({code})'
+ en: '{nom_fr} ({code})'
+ keyColumns: [code]
+ columns:
+ Variable de forcage:
+ code:
+ nom_fr:
+ nom_en:
+ description_fr:
+ description_en:
+ version_de_traitement:
+ keyColumns: [site, traitement]
+ internationalizationDisplay:
+ pattern:
+ fr: '{traitement} ({modalites})'
+ en: '{traitement} ({modalites})'
+ columns:
+ site:
+ traitement:
+ version:
+ date début:
+ date fin:
+ commentaire_fr:
+ commentaire_en:
+ modalites:
+ validations:
+ modalitesRef:
+ internationalizationName:
+ fr: "référence aux modalités"
+ columns: [ modalites ]
+ checker:
+ name: Reference
+ params:
+ refType: modalites
+ transformation:
+ codify: true
+ multiplicity: MANY
+compositeReferences:
+ localizations:
+ components:
+ - reference: sites
+ - reference: parcelles
+ parentKeyColumn: "site"
+dataTypes:
+ SWC:
+ repository:
+ filePattern:
+ data:
+ Nom parcelle:
+ components:
+ chemin:
+ checker:
+ name: Reference
+ params:
+ refType: parcelles
+ Nom traitement:
+ components:
+ valeur:
+ Date:
+ components:
+ day:
+ checker:
+ name: Date
+ params:
+ pattern: dd/MM/yyyy
+ time:
+ checker:
+ name: Date
+ params:
+ pattern: HH:mm:ss
+ datetime:
+ defaultValue:
+ expression: >
+ return datum.Date.day +" " +datum.Date.time
+ checker:
+ name: Date
+ params:
+ pattern: "dd/MM/yyyy HH:mm:ss"
+ duration: "30 MINUTES"
+ contexte:
+ components:
+ répétition:
+ checker:
+ name: Integer
+ params:
+ profondeur:
+ checker:
+ name: Integer
+ params:
+ SWC:
+ components:
+ valeur:
+ checker:
+ name: Float
+ params:
+ required: false
+ qualité:
+ checker:
+ name: Integer
+ params:
+ required: false
+ unite:
+ defaultValue:
+ expression: "\"pourcentage\""
+ checker:
+ name: Reference
+ params:
+ refType: unites
+ validations:
+ swcQualityEnumeration:
+ internationalizationName:
+ fr: "Si renseignée, la qualité du taux d'humidité vaut 1, 2 ou 3"
+ checker:
+ name: GroovyExpression
+ params:
+ groovy:
+ expression: "Set.of(\"\", \"0\", \"1\", \"2\").contains(datum.get(\"SWC\").get(\"qualité\"))"
+ format:
+ allowUnexpectedColumns: false
+ headerLine: 7
+ firstRowLine: 10
+ columns:
+ - header: "Nom parcelle"
+ boundTo:
+ variable: Nom parcelle
+ component: chemin
+ - header: "Nom traitement"
+ boundTo:
+ variable: Nom traitement
+ component: valeur
+ - header: "Date"
+ boundTo:
+ variable: Date
+ component: day
+ - header: "Time"
+ boundTo:
+ variable: Date
+ component: time
+ repeatedColumns:
+ - headerPattern: "SWC_([0-9]+)_([0-9]+)"
+ tokens:
+ - boundTo:
+ variable: contexte
+ component: répétition
+ exportHeader: "Répétition"
+ - boundTo:
+ variable: contexte
+ component: profondeur
+ exportHeader: "Profondeur"
+ boundTo:
+ variable: SWC
+ component: valeur
+ exportHeader: "SWC"
+ - headerPattern: "qc"
+ boundTo:
+ variable: SWC
+ component: qualité
+ exportHeader: "qc"
+ authorization:
+ authorizationScopes:
+ localization:
+ variable: Nom parcelle
+ component: chemin
+ timeScope:
+ variable: Date
+ component: datetime
+ dataGroups:
+ all:
+ label: "Toutes les données"
+ data:
+ - Nom parcelle
+ - Nom traitement
+ - Date
+ - contexte
+ - SWC
\ No newline at end of file
diff --git a/src/test/resources/data/repeatedcolumns/repeatedcolumnswithallowunexpectedcolumns.yaml b/src/test/resources/data/repeatedcolumns/repeatedcolumnswithallowunexpectedcolumns.yaml
new file mode 100644
index 000000000..c7a03ea86
--- /dev/null
+++ b/src/test/resources/data/repeatedcolumns/repeatedcolumnswithallowunexpectedcolumns.yaml
@@ -0,0 +1,272 @@
+version: 1
+application:
+ name: repeatedcolumns
+ version: 1
+references:
+ agroecosystemes :
+ keyColumns: [Agroécosystème_key]
+ columns:
+ Agroécosystème_key:
+ Agroécosystème_fr:
+ Agroécosystème_en:
+ region:
+ Département:
+ sites:
+ keyColumns: [nom du site_key]
+ validations:
+ agroecosystemRef:
+ internationalizationName:
+ fr: "référence à l'agroécosystème"
+ checker:
+ name: Reference
+ params:
+ refType: agroecosystemes
+ columns: [ Agroécosystème ]
+ checkDateMiseEnService:
+ internationalizationName:
+ fr: "validation de date"
+ checker:
+ name: Date
+ params:
+ pattern : "dd/MM/yyyy"
+ columns: [ "date mise en service du dispositif" ]
+ columns:
+ Agroécosystème:
+ nom du site_key:
+ nom du site_fr:
+ nom du site_en:
+ ville:
+ adresse:
+ cordonnées du dispositif:
+ milieu:
+ climat:
+ pluviométrie moyenne (mm):
+ température moyenne (°C):
+ vent dominant:
+ vitesse moyenne du vent (km/h):
+ type de sol:
+ profondeur moyenne du sol (m):
+ altitude moyenne (m):
+ date mise en service du dispositif:
+ parcelles:
+ keyColumns: [site,nom de la parcelle_key]
+ columns:
+ site:
+ bloc:
+ répétition:
+ nom de la parcelle_key:
+ nom de la parcelle_fr:
+ nom de la parcelle_en:
+ surface:
+ date de création:
+ commentaire_fr:
+ commentaire_en:
+ blocs:
+ validations:
+ creationDate:
+ internationalizationName:
+ fr: "date de création"
+ checker:
+ name: Date
+ params:
+ pattern: dd/MM/yyyy
+ columns: [ date creation ]
+ keyColumns: [site,nom_du_bloc,répétition]
+ columns:
+ site:
+ nom_du_bloc:
+ répétition:
+ date creation:
+ decription_fr:
+ description_en:
+ unites:
+ keyColumns: [nom_key]
+ columns:
+ code_key:
+ code_fr:
+ code_en:
+ nom_key:
+ nom_fr:
+ nom_en:
+ modalites:
+ internationalizedColumns:
+ nom_fr:
+ fr: nom_fr
+ en: nom_en
+ internationalizationDisplay:
+ pattern:
+ fr: '{nom_fr} ({code})'
+ en: '{nom_fr} ({code})'
+ keyColumns: [code]
+ columns:
+ Variable de forcage:
+ code:
+ nom_fr:
+ nom_en:
+ description_fr:
+ description_en:
+ version_de_traitement:
+ keyColumns: [site, traitement]
+ internationalizationDisplay:
+ pattern:
+ fr: '{traitement} ({modalites})'
+ en: '{traitement} ({modalites})'
+ columns:
+ site:
+ traitement:
+ version:
+ date début:
+ date fin:
+ commentaire_fr:
+ commentaire_en:
+ modalites:
+ validations:
+ modalitesRef:
+ internationalizationName:
+ fr: "référence aux modalités"
+ columns: [ modalites ]
+ checker:
+ name: Reference
+ params:
+ refType: modalites
+ transformation:
+ codify: true
+ multiplicity: MANY
+compositeReferences:
+ localizations:
+ components:
+ - reference: sites
+ - reference: parcelles
+ parentKeyColumn: "site"
+dataTypes:
+ SWC:
+ repository:
+ filePattern:
+ data:
+ Nom parcelle:
+ components:
+ chemin:
+ checker:
+ name: Reference
+ params:
+ refType: parcelles
+ Nom traitement:
+ components:
+ valeur:
+ Date:
+ components:
+ day:
+ checker:
+ name: Date
+ params:
+ pattern: dd/MM/yyyy
+ time:
+ checker:
+ name: Date
+ params:
+ pattern: HH:mm:ss
+ datetime:
+ defaultValue:
+ expression: >
+ return datum.Date.day +" " +datum.Date.time
+ checker:
+ name: Date
+ params:
+ pattern: "dd/MM/yyyy HH:mm:ss"
+ duration: "30 MINUTES"
+ contexte:
+ components:
+ répétition:
+ checker:
+ name: Integer
+ params:
+ profondeur:
+ checker:
+ name: Integer
+ params:
+ SWC:
+ components:
+ valeur:
+ checker:
+ name: Float
+ params:
+ required: false
+ qualité:
+ checker:
+ name: Integer
+ params:
+ required: false
+ unite:
+ defaultValue:
+ expression: "\"pourcentage\""
+ checker:
+ name: Reference
+ params:
+ refType: unites
+ validations:
+ swcQualityEnumeration:
+ internationalizationName:
+ fr: "Si renseignée, la qualité du taux d'humidité vaut 1, 2 ou 3"
+ checker:
+ name: GroovyExpression
+ params:
+ groovy:
+ expression: "Set.of(\"\", \"0\", \"1\", \"2\").contains(datum.get(\"SWC\").get(\"qualité\"))"
+ format:
+ allowUnexpectedColumns: true
+ headerLine: 7
+ firstRowLine: 10
+ columns:
+ - header: "Nom parcelle"
+ boundTo:
+ variable: Nom parcelle
+ component: chemin
+ - header: "Nom traitement"
+ boundTo:
+ variable: Nom traitement
+ component: valeur
+ - header: "Date"
+ boundTo:
+ variable: Date
+ component: day
+ - header: "Time"
+ boundTo:
+ variable: Date
+ component: time
+ repeatedColumns:
+ - headerPattern: "SWC_([0-9]+)_([0-9]+)"
+ tokens:
+ - boundTo:
+ variable: contexte
+ component: répétition
+ exportHeader: "Répétition"
+ - boundTo:
+ variable: contexte
+ component: profondeur
+ exportHeader: "Profondeur"
+ boundTo:
+ variable: SWC
+ component: valeur
+ exportHeader: "SWC"
+ - headerPattern: "qc"
+ boundTo:
+ variable: SWC
+ component: qualité
+ exportHeader: "qc"
+ authorization:
+ authorizationScopes:
+ localization:
+ variable: Nom parcelle
+ component: chemin
+ timeScope:
+ variable: Date
+ component: datetime
+ dataGroups:
+ all:
+ label: "Toutes les données"
+ data:
+ - Nom parcelle
+ - Nom traitement
+ - Date
+ - contexte
+ - SWC
\ No newline at end of file
diff --git a/src/test/resources/data/repeatedcolumns/sites.csv b/src/test/resources/data/repeatedcolumns/sites.csv
new file mode 100644
index 000000000..ee2ccfa5a
--- /dev/null
+++ b/src/test/resources/data/repeatedcolumns/sites.csv
@@ -0,0 +1,5 @@
+Agroécosystème;nom du site_key;nom du site_fr;nom du site_en;ville;adresse;cordonnées du dispositif;milieu;climat;pluviométrie moyenne (mm);température moyenne (°C);vent dominant;vitesse moyenne du vent (km/h);type de sol;profondeur moyenne du sol (m);altitude moyenne (m);date mise en service du dispositif
+grandes_cultures_et_cultures_dediees_a_la_production_de_biomasse;estrees-mons;estrees-mons;estrees-mons;Estrées-Mons;2 chaussée brunehault;49°52'16.40 N 3°01'46.9E;plaine céréalière;semi océanique;610.0;11.0;W;3.1;orthic luvicol;3.2;85.0;01/03/2008
+prairies_permanentes;laqueuille;laqueuille;laqueuille;Laqueuille;Les Razats;45°38'34.47N 2°43'53.75E;moyenne montagne;;1000.0;8.0;;;;;1040.0;01/01/2002
+rotation_prairie_culture;lusignan;lusignan;lusignan;Lusignan;Les verrines;46°25'3.14N 0°07'9.46E;plaine cultivée;océanique;850.0;11.6;SWW;2.56;cambisol saturé;;153.0;01/05/2005
+prairies_permanentes;theix;theix;theix;Theix;Saint-Genès-Campanelle;45°43'23.01N 3°01'07.57E;moyenne montagne;;780.0;8.7;;;;;870.0;01/05/2005
diff --git a/src/test/resources/data/repeatedcolumns/unites.csv b/src/test/resources/data/repeatedcolumns/unites.csv
new file mode 100644
index 000000000..f8cdf68f5
--- /dev/null
+++ b/src/test/resources/data/repeatedcolumns/unites.csv
@@ -0,0 +1,60 @@
+code_key;code_fr;code_en;nom_key;nom_fr;nom_en
+%;%;%;pourcentage;pourcentage;percentage
+Ax;Ax;Ax;animaux;animaux;animals
+AxJour/ha;AxJour/ha;AxJour/ha;animaux_jours_par_hectare;animaux jours par hectare;Animal days per hectare
+KPa;KPa;KPa;kilopascal;kilopascal;kilopascal
+Kg Al/ha;Kg Al/ha;Kg Al/ha;Kilogramme_d_Aluminium_par_ha;Kilogramme d'Aluminium par ha;Kilogram aluminum per ha
+Kg C/ha/jour;Kg C/ha/jour;Kg C/ha/jour;kilogramme_de_C_par_hectare_et_par_jour;kilogramme de C par hectare et par jour;C kg per hectare and per day
+Kg Ca/ha;Kg Ca/ha;Kg Ca/ha;Kilogramme_de_Calcium_par_ha;Kilogramme de Calcium par ha;Kilogram of calcium per ha
+Kg Cl/ha;Kg Cl/ha;Kg Cl/ha;Kilogramme_de_Chlorure_par_ha;Kilogramme de Chlorure par ha;Kilogram of chloride per ha
+Kg Fe/ha;Kg Fe/ha;Kg Fe/ha;Kilogramme_de_Fer_par_ha;Kilogramme de Fer par ha;Kilogram of iron per ha
+Kg K /ha;Kg K /ha;Kg K /ha;Kilogramme_de_potassium_apporte_par_ha;Kilogramme de potassium apporté par ha;Kilogram of potassium provided by ha
+Kg Mg/ha;Kg Mg/ha;Kg Mg/ha;Kilogramme_de_Magnesium_par_ha;Kilogramme de Magnesium par ha;Kilogram of Magnesium per ha
+Kg Mn/ha;Kg Mn/ha;Kg Mn/ha;Kilogramme_de_Manganese_par_ha;Kilogramme de Manganèse par ha;Kilogram of manganese per ha
+Kg N /ha;Kg N /ha;Kg N /ha;Kilogramme_d_azote_apporte_par_ha;Kilogramme d'azote apporté par ha;Kilogram of nitrogen applied per hectare
+Kg Na/ha;Kg Na/ha;Kg Na/ha;Kilogramme_de_Sodium_par_ha;Kilogramme de Sodium par ha;Kilogram of sodium per ha
+Kg P /ha;Kg P /ha;Kg P /ha;Kilogramme_de_phosphore_apporte_par_ha;Kilogramme de phosphore apporté par ha;Kilogram of phosphorus in ha
+Kg S/ha;Kg S/ha;Kg S/ha;Kilogramme_de_Soufre_par_ha;Kilogramme de Soufre par ha;Kilogram of sulfur per ha
+UF;UF;UF;Unite_fourragere;Unité fourragère;feed unit
+W m-2;W m-2;W m-2;watt_par_metre_carre;watt par mètre carré;watt per square meter
+cm;cm;cm;centimetre;centimètre;centimeter
+dose/ha;dose/ha;dose/ha;dose_homoguee_par_hectare;dose homoguée par hectare;homoguée dose per hectare
+g C/ha/Jour;g C/ha/Jour;g C/ha/Jour;gramme_de_C_par_hectare_et_par_jour;gramme de C par hectare et par jour;C gram per hectare per day
+g N/ha/Jour;g N/ha/Jour;g N/ha/Jour;gramme_de_N_par_hectare_et_par_jour;gramme de N par hectare et par jour;gram of N per hectare per day
+g/kg;g/kg;g/kg;gramme_par_kilo;gramme par kilo;gram per kilo
+g/kgMS x kgMS;g/kgMS x kgMS;g/kgMS x kgMS;gramme_par_kilograme_de_matiere_seche_de_MS_x_kilogramme_de_matiere_seche_distribue_par_jour_pour_l_ensemble_des_animaux;gramme par kilograme de matière sèche de MS x kilogramme de matière sèche distribué par jour pour l'ensemble des animaux;gram per kilograme of dry matter DM x kilogram of dry matter per day distributed to all animals
+gMS/m²;gMS/m²;gMS/m²;gramme_de_matiere_seche_par_metre_carre;gramme de matière sèche par mètre carré;gram of dry matter per square meter
+gMS/m²/;gMS/m²/;gMS/m²/;gramme_de_matiere_seche_par_metre_carre_de_repousse;gramme de matière sèche par mètre carré de repousse;gram of dry matter per square meter of regrowth
+gMS/m²/an;gMS/m²/an;gMS/m²/an;gramme_de_matiere_seche_par_metre_carre_et_par_an;gramme de matière sèche par mètre carré et par an;gram of dry matter per square meter and per year
+gMS/m²/période;gMS/m²/période;gMS/m²/période;gramme_de_matiere_seche_par_metre_carre_et_par_periode;gramme de matière sèche par mètre carré et par periode;gram of dry matter per square meter and per period
+gMS/m²/période de repousse;gMS/m²/période de repousse;gMS/m²/période de repousse;gms/m²/periode_de_repousse;gMS/m²/période de repousse;gMS/m²/période de repousse
+gMS/m³;gMS/m³;gMS/m³;gramme_de_matiere_seche_par_metre_cube;gramme de matière sèche par mètre cube;gram of dry matter per cubic meter
+grains/m2;grains/m2;grains/m2;grains_par_metre_carre;grains par mètre carré;grains per square meter
+jours;jours;jours;jours;jours;days
+kg;kg;kg;kilogramme;kilogramme;kilogram
+kg m-1s-1;kg m-1s-1;kg m-1s-1;kilogramme_par_metre_et_par_seconde;kilogramme par mètre et par seconde;kg per meter per second
+kg/AxJour;kg/AxJour;kg/AxJour;kilogramme_par_animaux_jours;kilogramme par animaux jours;kilogram per day animals
+kg/ha;kg/ha;kg/ha;kilogramme_par_hectare;kilogramme par hectare;kilogram per hectare
+kgMS/par;kgMS/par;kgMS/par;kilogramme_de_matiere_seche_par_parcelle;kilogramme de matière sèche par parcelle;kilogram of dry matter per plot
+l/ha;l/ha;l/ha;litre_par_hectare;litre par hectare;liters per hectare
+m s-1;m s-1;m s-1;metre_par_seconde;mètre par seconde;meter per second
+mg H2O/ha/jour;mg H2O/ha/jour;mg H2O/ha/jour;milligramme_de_H2O_par_hectare_et_par_jour;milligramme de H2O par hectare et par jour;H2O milligram per hectare per day
+mg/kg;mg/kg;mg/kg;milligramme_par_kilogramme;milligramme par kilogramme;milligram per kilogram
+ml hr-1;ml hr-1;ml hr-1;millilitre_par_heure;millilitre par heure;milliliter per hour
+mm;mm;mm;millimetre;millimètre;millimeter
+mmol mol-1;mmol mol-1;mmol mol-1;millimole_par_mole;millimole par mole;millimoles per mole
+m²/m²;m²/m²;m²/m²;metre_carre_par_metre_carre;mètre carré par mètre carré;square meter per square meter
+nounit;nounit;nounit;pas_d_unite;Pas d'unité;no unit
+t/ha;t/ha;t/ha;Tonne_par_hectare;Tonne par hectare;Tonne per hectare
+t/ha/an;t/ha/an;t/ha/an;tonne_par_hectare_et_par_an;tonne par hectare et par an;tonne per hectare per year
+°;°;°;degre;degré;degree
+°C;°C;°C;degre_celcius;degré celcius;degrees Celsius
+°K;°K;°K;degre_kelvin;degré kelvin;degree Kelvin
+µmol m-2 s-1;µmol m-2 s-1;µmol m-2 s-1;micromole_par_mettre_carre_et_par_seconde;micromole par mettre carré et par seconde;micromole per meter squared per second
+µmol mol-1;µmol mol-1;µmol mol-1;micromole_par_mole;micromole par mole;micromoles per mole
+cm²;cm²;cm²;centimetre_carre;centimètre carré;square centimeter
+cmol+/kg;cmol+/kg;cmol+/kg;centimole_de_charge_positive_par_kilogramme;centimole de charge positive par kilogramme;centimole of positive charge per kilogram
+cm³/cm³;cm³/cm³;cm³/cm³;centimetre_cube_par_centimetre_cube;centimètre cube par centimètre cube;cubic centimeter per cubic centimeter
+g tf/cm³ tf;g tf/cm³ tf;g tf/cm³ tf;gramme_de_terre_fine_par_centimetre_cube_de_terre_fine;gramme de terre fine par centimètre cube de terre fine;gram of fine soil per cubic centimeter of fine soil
+g sg/cm³ sg;g sg/cm³ sg;g sg/cm³ sg;gramme_de_sol_global_par_centimetre_cube_de_sol_gobal;gramme de sol global par centimètre cube de sol global;gram of global soil per cubic centimeter of global soil
+g/g;g/g;g/g;gramme_par_gramme;gramme par gramme;ram per gram
\ No newline at end of file
diff --git a/src/test/resources/data/repeatedcolumns/version_de_traitement.csv b/src/test/resources/data/repeatedcolumns/version_de_traitement.csv
new file mode 100644
index 000000000..b6e7b5e55
--- /dev/null
+++ b/src/test/resources/data/repeatedcolumns/version_de_traitement.csv
@@ -0,0 +1,26 @@
+site;traitement;version;date début;date fin;commentaire_fr;commentaire_en;modalites
+estrees-mons;t1;1;17/03/2010;;version initiale;initial version;FC,GR,R5,WL
+estrees-mons;t2;1;17/03/2010;;version initiale;initial version;FC,GR,R5,WTS
+estrees-mons;t3;1;17/03/2010;;version initiale;initial version;FC,GE,R5,WTS
+estrees-mons;t4;1;17/03/2010;;version initiale;initial version;FC,GE,R5,WL
+estrees-mons;t5;1;17/03/2010;;version initiale;initial version;F-,GR,R5,WLO
+estrees-mons;t6;1;17/03/2010;;version initiale;initial version;F-,R6,W0
+lusignan;t1;1;15/04/2005;;version initiale;initial version;R4
+lusignan;t2;1;15/04/2005;;version initiale;initial version;FC,R3,UF
+lusignan;t3;1;15/04/2005;;version initiale;initial version;FC,R2,UF
+lusignan;t4;1;15/04/2005;;version initiale;initial version;F-,R2,UF
+lusignan;t5;1;15/04/2005;;version initiale;initial version;FC,R1,UF
+lusignan;t6;1;15/04/2005;;version initiale;initial version;F-,R2,UP
+lusignan;t7;1;15/04/2005;;version initiale;initial version;F-,R1,UP
+theix;t1;1;01/01/2005;;version initiale;initial version;C+,F0,PR,TAB,UP
+theix;t2;1;01/01/2005;;version initiale;initial version;C-,F0,PR,TAB,UP
+theix;t3;1;01/01/2005;;version initiale;initial version;C-,F0,PR,TAO,UP
+theix;t4;1;01/01/2005;;version initiale;initial version;F0,UA
+theix;t5;1;01/01/2005;;version initiale;initial version;F0,UF
+theix;t6;1;01/01/2005;;version initiale;initial version;FPK,UF
+theix;t7;1;01/01/2005;;version initiale;initial version;FNPK,UF
+theix;t8;1;01/01/2005;;version initiale;initial version;F0,U0
+laqueuille;t9;1;01/05/2002;;version initiale;initial version;C+,FNPK,PC,TAB,UP
+laqueuille;t10;1;01/05/2002;;version initiale;initial version;C-,FPK,PC,TAB,UP
+estrees-mons;sn1;1;17/03/2010;;version initiale;initial version;U0,WL
+estrees-mons;sn2;1;17/03/2010;;version initiale;initial version;U0,WTS
diff --git a/ui/src/locales/en.json b/ui/src/locales/en.json
index a7bfebba3..b5adcd2a5 100644
--- a/ui/src/locales/en.json
+++ b/ui/src/locales/en.json
@@ -315,6 +315,7 @@
"unDeclaredValueForChart": "In the chart description of variable <code> {variable} </code> of data type <code> {dataType} </code>, the value is not declared.<br /> Expected values ​​<code>{components}</code>",
"undeclaredDataGroupForVariable": "Variable <code>{variable}</code> in dataType <code>{dataType}</code> doesn't belong to any data group, it needs to be in one",
"unexpectedHeaderColumn": "Unexpected column header. Expected : <code>{expectedHeaderColumn}</code> <br />Actual : <code>{actualHeaderColumn}</code>",
+ "unexpectedHeaderColumnsInList": "Unexpected column header. Expected : <code>{expectedHeaderColumn}</code> <br />Actual : <code>{actualHeaderColumns}</code>",
"unexpectedTokenCount": "Unexpected token count. Expected : <code>{expectedTokenCount}</code><br/>Actual header : <code>{actualHeader}</code> has <code>{actualTokenCount}</code> tokens",
"unknownCheckerNameForValidationRuleInDataType": "For the validation rule : <code>{lineValidationRuleKey}</code> in data type <code>{dataType}</code>, '<code>{checkerName}</code>' is declared but is not a known checker. Known checkers are <code>{checkerOnTargetNames}</code>",
"unknownCheckerNameForValidationRuleInReference": "For the validation rule : <code>{lineValidationRuleKey}</code> in reference <code>{reference}</code>, '<code>{checkerName}</code>' is declared but is not a known checker. Known checkers are <code>{checkerOnTargetNames}</code>",
diff --git a/ui/src/locales/fr.json b/ui/src/locales/fr.json
index 6f7721282..057ac1dd9 100644
--- a/ui/src/locales/fr.json
+++ b/ui/src/locales/fr.json
@@ -321,6 +321,7 @@
"unDeclaredValueForChart": "Pour visualiser correctement le graphe de la variable <code> {variable} </code> du type de données <code> {dataType} </code>, il est nécessaire de déclarer la valeur.<br /> La valeur doit être parmi : <code>{components}</code>",
"undeclaredDataGroupForVariable": "La variable <code>{variable}</code> du dataType <code>{dataType}</code> n’est déclarée dans aucun groupe de données, elle doit l'être.",
"unexpectedHeaderColumn": "En-tête de colonne inattendu. En-tête attendu : <code>{expectedHeaderColumn}</code> <br />En-tête actuel : <code>{actualHeaderColumn}</code>",
+ "unexpectedHeaderColumnsInList": "En-tête de colonne inattendu. En-tête attendu : <code>{expectedHeaderColumn}</code> <br />En-tête actuel : <code>{actualHeaderColumns}</code>",
"unexpectedTokenCount": "Le nombre de jetons(token) est inattendu. Nombre attendu : <code>{expectedTokenCount}</code><br/>L'en-tête actuel : <code>{actualHeader}</code> comprend <code>{actualTokenCount}</code> tokens",
"unknownCheckerNameForValidationRuleInDataType": "Pour la règle de validation <code>{lineValidationRuleKey}</code> du type de données <code>{dataType}</code>, '<code>{checkerName}</code>' est déclaré mais ce n’est pas un contrôle connu. Les contrôles connus sont : {allCheckerNames}",
"unknownCheckerNameForValidationRuleInReference": "Pour la règle de validation <code>{lineValidationRuleKey}</code> de la référence <code>{reference}</code>, '<code>{checkerName}</code>' est déclaré mais ce n’est pas un contrôle connu. Les contrôles connus sont : {allCheckerNames}",
diff --git a/ui/src/services/ErrorsService.js b/ui/src/services/ErrorsService.js
index 4871a7212..820c179fa 100644
--- a/ui/src/services/ErrorsService.js
+++ b/ui/src/services/ErrorsService.js
@@ -108,6 +108,7 @@ const ERRORS = {
unDeclaredValueForChart: (params) => i18n.t("errors.unDeclaredValueForChart", params),
undeclaredDataGroupForVariable: (params) => i18n.t("errors.undeclaredDataGroupForVariable", params),
unexpectedHeaderColumn: (params) => i18n.t("errors.unexpectedHeaderColumn", params),
+ unexpectedHeaderColumnsInList: (params) => i18n.t("errors.unexpectedHeaderColumnsInList", params),
unexpectedTokenCount: (params) => i18n.t("errors.unexpectedTokenCount", params),
unknownCheckerNameForValidationRuleInDataType: (params) => i18n.t("errors.unknownCheckerNameForValidationRuleInDataType", params),
unknownCheckerNameForValidationRuleInReference: (params) => i18n.t("errors.unknownCheckerNameForValidationRuleInReference", params),
--
GitLab
From 39b6e616b10edc836f6b0a6caa431e002e653bd3 Mon Sep 17 00:00:00 2001
From: lucile varloteaux <lucile.varloteaux@inrae.fr>
Date: Tue, 11 Jul 2023 15:34:09 +0200
Subject: [PATCH 4/5] oublie d'un fichier dans le commit
---
.../oresing/checker/InvalidDatasetContentException.java | 8 ++++++++
1 file changed, 8 insertions(+)
diff --git a/src/main/java/fr/inra/oresing/checker/InvalidDatasetContentException.java b/src/main/java/fr/inra/oresing/checker/InvalidDatasetContentException.java
index eabb6d4e3..adb384a09 100644
--- a/src/main/java/fr/inra/oresing/checker/InvalidDatasetContentException.java
+++ b/src/main/java/fr/inra/oresing/checker/InvalidDatasetContentException.java
@@ -9,6 +9,7 @@ import fr.inra.oresing.rest.ValidationCheckResult;
import org.apache.commons.lang3.builder.ToStringBuilder;
import java.util.List;
+import java.util.Map;
/**
* Exception levée si un jeu de données est incorrect (aussi bien entêtes que contenu)
@@ -29,6 +30,13 @@ public class InvalidDatasetContentException extends OreSiTechnicalException {
));
}
+ public static InvalidDatasetContentException forUnexpectedHeaderColumnsInList(String expected, List<Map.Entry<String, String>> actual, int headerLine) {
+ return newInvalidDatasetContentException(headerLine, "unexpectedHeaderColumn", ImmutableMap.of(
+ "actualHeaderColumns", actual,
+ "expectedHeaderColumn", expected
+ ));
+ }
+
public static InvalidDatasetContentException forHeaderColumnPatternNotMatching(String expectedPattern, String actual, int headerLine) {
return newInvalidDatasetContentException(headerLine, "headerColumnPatternNotMatching", ImmutableMap.of(
"actualHeaderColumn", actual,
--
GitLab
From 4d287df6ebddfa926911110dc43b3e3da1e20ec7 Mon Sep 17 00:00:00 2001
From: lucile varloteaux <lucile.varloteaux@inrae.fr>
Date: Fri, 21 Jul 2023 12:03:49 +0200
Subject: [PATCH 5/5] =?UTF-8?q?r=C3=A9paration=20test=20repeated=20column?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
---
documentations/services_model.json | 2 +-
.../fr/inra/oresing/rest/OreSiService.java | 27 +++++++++++--------
.../java/fr/inra/oresing/rest/Fixtures.java | 6 ++---
.../data/recursivite/recusivite.yaml | 2 +-
.../applications/errors/ref_ola_errors.json | 2 +-
.../authorisation/authorizations.json | 2 +-
.../datatypes/authorisation/grantable.json | 2 +-
.../ore/monsore/datatypes/pem.json | 2 +-
.../applications/ore/monsore/monsoere.json | 2 +-
.../ore/monsore/references/projet.json | 2 +-
.../ore/monsore/references/sites.json | 2 +-
.../ore/monsore/references/type_de_sites.json | 2 +-
12 files changed, 29 insertions(+), 24 deletions(-)
diff --git a/documentations/services_model.json b/documentations/services_model.json
index 96080d064..431cadf1b 100644
--- a/documentations/services_model.json
+++ b/documentations/services_model.json
@@ -1 +1 @@
-{"swagger":"2.0","info":{"description":"Api Rest pour le stockage et la restitution de fichier CSV","version":"1.0","title":"ore-si-ng","termsOfService":"https://inra.fr","license":{"name":"LICENSE","url":"https://www.gnu.org/licenses/lgpl.html"}},"host":"localhost","basePath":"/","tags":[{"name":"authentication-resources","description":"Authentication Resources"},{"name":"authorization-resources","description":"Authorization Resources"},{"name":"ore-si-resources","description":"Ore Si Resources"}],"paths":{"/api/v1/applications":{"get":{"tags":["ore-si-resources"],"summary":"getApplications","operationId":"getApplicationsUsingGET","produces":["application/json"],"parameters":[{"name":"filter","in":"query","description":"filter","required":false,"type":"array","items":{"type":"string"},"collectionFormat":"multi"}],"responses":{"200":{"description":"OK","schema":{"type":"array","items":{"$ref":"#/definitions/Application"}}},"401":{"description":"Unauthorized"},"403":{"description":"Forbidden"},"404":{"description":"Not Found"}},"deprecated":false}},"/api/v1/applications/{applicationNameOrId}/additionalFiles/authorization/{authorizationId}":{"delete":{"tags":["authorization-resources"],"summary":"revokeAdditionalFilesAuthorization","operationId":"revokeAdditionalFilesAuthorizationUsingDELETE","produces":["application/json"],"parameters":[{"name":"applicationNameOrId","in":"path","description":"applicationNameOrId","required":true,"type":"string"},{"name":"authorizationId","in":"path","description":"authorizationId","required":true,"type":"string"}],"responses":{"200":{"description":"OK","schema":{"type":"string"}},"204":{"description":"No Content"},"401":{"description":"Unauthorized"},"403":{"description":"Forbidden"}},"deprecated":false}},"/api/v1/applications/{applicationNameOrId}/additionalFiles/authorization/{userLoginOrId}":{"get":{"tags":["authorization-resources"],"summary":"getAdditionalFilesAuthorizationsForUser","operationId":"getAdditionalFilesAuthorizationsForUserUsingGET","produces":["application/json"],"parameters":[{"name":"applicationNameOrId","in":"path","description":"applicationNameOrId","required":true,"type":"string"},{"name":"userLoginOrId","in":"path","description":"userLoginOrId","required":true,"type":"string"}],"responses":{"200":{"description":"OK","schema":{"$ref":"#/definitions/AuthorizationsAdditionalFilesResult"}},"401":{"description":"Unauthorized"},"403":{"description":"Forbidden"},"404":{"description":"Not Found"}},"deprecated":false}},"/api/v1/applications/{applicationNameOrId}/authorization/user/{userLoginOrId}":{"get":{"tags":["authorization-resources"],"summary":"getAuthorizationsForUser","operationId":"getAuthorizationsForUserUsingGET","produces":["application/json"],"parameters":[{"name":"applicationNameOrId","in":"path","description":"applicationNameOrId","required":true,"type":"string"},{"name":"userLoginOrId","in":"path","description":"userLoginOrId","required":true,"type":"string"}],"responses":{"200":{"description":"OK","schema":{"$ref":"#/definitions/AuthorizationsResult"}},"401":{"description":"Unauthorized"},"403":{"description":"Forbidden"},"404":{"description":"Not Found"}},"deprecated":false}},"/api/v1/applications/{applicationNameOrId}/references/authorization/{authorizationId}":{"delete":{"tags":["authorization-resources"],"summary":"revokeReferencesAuthorization","operationId":"revokeReferencesAuthorizationUsingDELETE","produces":["application/json"],"parameters":[{"name":"applicationNameOrId","in":"path","description":"applicationNameOrId","required":true,"type":"string"},{"name":"authorizationId","in":"path","description":"authorizationId","required":true,"type":"string"}],"responses":{"200":{"description":"OK","schema":{"type":"string"}},"204":{"description":"No Content"},"401":{"description":"Unauthorized"},"403":{"description":"Forbidden"}},"deprecated":false}},"/api/v1/applications/{applicationNameOrId}/references/authorization/{userLoginOrId}":{"get":{"tags":["authorization-resources"],"summary":"getReferencesAuthorizationsForUser","operationId":"getReferencesAuthorizationsForUserUsingGET","produces":["application/json"],"parameters":[{"name":"applicationNameOrId","in":"path","description":"applicationNameOrId","required":true,"type":"string"},{"name":"userLoginOrId","in":"path","description":"userLoginOrId","required":true,"type":"string"}],"responses":{"200":{"description":"OK","schema":{"$ref":"#/definitions/AuthorizationsReferencesResult"}},"401":{"description":"Unauthorized"},"403":{"description":"Forbidden"},"404":{"description":"Not Found"}},"deprecated":false}},"/api/v1/applications/{nameOrId}":{"get":{"tags":["ore-si-resources"],"summary":"getApplication","operationId":"getApplicationUsingGET","produces":["application/json"],"parameters":[{"name":"filter","in":"query","description":"filter","required":false,"type":"array","items":{"type":"string"},"collectionFormat":"multi"},{"name":"nameOrId","in":"path","description":"nameOrId","required":true,"type":"string"}],"responses":{"200":{"description":"OK","schema":{"$ref":"#/definitions/ApplicationResult"}},"401":{"description":"Unauthorized"},"403":{"description":"Forbidden"},"404":{"description":"Not Found"}},"deprecated":false}},"/api/v1/applications/{nameOrId}/additionalFiles":{"get":{"tags":["ore-si-resources"],"summary":"Get a additionalFiles with their description using search params","description":"Returns a zip containing additional files and their description","operationId":"getAdditionalFilesNamesZipUsingGET","produces":["application/octet-stream"],"parameters":[{"name":"nameOrId","in":"path","description":"The name or uuid of an application","required":true,"type":"string"},{"name":"params","in":"query","description":"The parameters for filter the search","required":false,"type":"string","allowEmptyValue":false}],"responses":{"200":{"description":"OK","schema":{"$ref":"#/definitions/StreamingResponseBody"}},"401":{"description":"Unauthorized"},"403":{"description":"Forbidden"},"404":{"description":"Not Found"}},"deprecated":false},"delete":{"tags":["ore-si-resources"],"summary":"Delete a additionalFiles ","description":"Delete additional file based on params search","operationId":"removeAdditionalFilesUsingDELETE","produces":["text/plain"],"parameters":[{"name":"nameOrId","in":"path","description":"The name or uuid of an application","required":true,"type":"string"},{"name":"params","in":"query","description":"The parameters for filter the search","required":false,"type":"string","allowEmptyValue":false}],"responses":{"200":{"description":"OK","schema":{"type":"string"}},"204":{"description":"No Content"},"401":{"description":"Unauthorized"},"403":{"description":"Forbidden"}},"deprecated":false}},"/api/v1/applications/{nameOrId}/additionalFiles/authorization":{"post":{"tags":["authorization-resources"],"summary":"addAdditionalFileAuthorization","operationId":"addAdditionalFileAuthorizationUsingPOST","consumes":["application/json"],"produces":["application/json"],"parameters":[{"in":"body","name":"authorization","description":"authorization","required":true,"schema":{"$ref":"#/definitions/CreateAdditionalFileAuthorizationRequest"}},{"name":"nameOrId","in":"path","description":"nameOrId","required":true,"type":"string"}],"responses":{"200":{"description":"OK","schema":{"type":"object","additionalProperties":{"type":"string"}}},"201":{"description":"Created"},"401":{"description":"Unauthorized"},"403":{"description":"Forbidden"},"404":{"description":"Not Found"}},"deprecated":false}},"/api/v1/applications/{nameOrId}/additionalFiles/{additionalFileName}":{"get":{"tags":["ore-si-resources"],"summary":"listAdditionalFilesNames","operationId":"listAdditionalFilesNamesUsingGET","produces":["application/json"],"parameters":[{"name":"additionalFileName","in":"path","description":"additionalFileName","required":true,"type":"string"},{"name":"nameOrId","in":"path","description":"nameOrId","required":true,"type":"string"},{"name":"params","in":"query","description":"params","required":false,"type":"string"}],"responses":{"200":{"description":"OK","schema":{"$ref":"#/definitions/GetAdditionalFilesResult"}},"401":{"description":"Unauthorized"},"403":{"description":"Forbidden"},"404":{"description":"Not Found"}},"deprecated":false},"post":{"tags":["ore-si-resources"],"summary":"createAdditionalFile","operationId":"createAdditionalFileUsingPOST","consumes":["multipart/form-data"],"produces":["application/json"],"parameters":[{"name":"file","in":"formData","description":"file","required":false,"type":"file"},{"name":"nameOrId","in":"path","description":"nameOrId","required":true,"type":"string"},{"name":"params","in":"query","description":"params","required":true,"type":"string"}],"responses":{"200":{"description":"OK","schema":{"type":"string","format":"uuid"}},"201":{"description":"Created"},"401":{"description":"Unauthorized"},"403":{"description":"Forbidden"},"404":{"description":"Not Found"}},"deprecated":false}},"/api/v1/applications/{nameOrId}/additionalfiles/authorization":{"get":{"tags":["authorization-resources"],"summary":"getAdditionalFilesAuthorizations","operationId":"getAdditionalFilesAuthorizationsUsingGET","produces":["application/json"],"parameters":[{"name":"nameOrId","in":"path","description":"nameOrId","required":true,"type":"string"},{"name":"params","in":"query","description":"params","required":true,"items":{"type":"object","additionalProperties":{"type":"string"}}}],"responses":{"200":{"description":"OK","schema":{"$ref":"#/definitions/GetAuthorizationAdditionalFilesResults"}},"401":{"description":"Unauthorized"},"403":{"description":"Forbidden"},"404":{"description":"Not Found"}},"deprecated":false}},"/api/v1/applications/{nameOrId}/authorization":{"get":{"tags":["authorization-resources"],"summary":"getAuthorizations","operationId":"getAuthorizationsUsingGET","produces":["application/json"],"parameters":[{"name":"nameOrId","in":"path","description":"nameOrId","required":true,"type":"string"}],"responses":{"200":{"description":"OK","schema":{"$ref":"#/definitions/GetAuthorizationResults"}},"401":{"description":"Unauthorized"},"403":{"description":"Forbidden"},"404":{"description":"Not Found"}},"deprecated":false},"post":{"tags":["authorization-resources"],"summary":"addAuthorization","operationId":"addAuthorizationUsingPOST","consumes":["application/json"],"produces":["application/json"],"parameters":[{"in":"body","name":"authorization","description":"authorization","required":true,"schema":{"$ref":"#/definitions/CreateAuthorizationRequest"}},{"name":"nameOrId","in":"path","description":"nameOrId","required":true,"type":"string"}],"responses":{"200":{"description":"OK","schema":{"type":"object","additionalProperties":{"type":"string"}}},"201":{"description":"Created"},"401":{"description":"Unauthorized"},"403":{"description":"Forbidden"},"404":{"description":"Not Found"}},"deprecated":false}},"/api/v1/applications/{nameOrId}/authorization/{authorizationId}":{"get":{"tags":["authorization-resources"],"summary":"getAuthorizationById","operationId":"getAuthorizationByIdUsingGET","produces":["application/json"],"parameters":[{"name":"authorizationId","in":"path","description":"authorizationId","required":true,"type":"string","format":"uuid"},{"name":"nameOrId","in":"path","description":"nameOrId","required":true,"type":"string"}],"responses":{"200":{"description":"OK","schema":{"$ref":"#/definitions/GetAuthorizationResult"}},"401":{"description":"Unauthorized"},"403":{"description":"Forbidden"},"404":{"description":"Not Found"}},"deprecated":false},"delete":{"tags":["authorization-resources"],"summary":"revokeAuthorization","operationId":"revokeAuthorizationUsingDELETE","produces":["application/json"],"parameters":[{"name":"authorizationId","in":"path","description":"authorizationId","required":true,"type":"string","format":"uuid"},{"name":"nameOrId","in":"path","description":"nameOrId","required":true,"type":"string"}],"responses":{"200":{"description":"OK","schema":{"type":"string","format":"uuid"}},"204":{"description":"No Content"},"401":{"description":"Unauthorized"},"403":{"description":"Forbidden"}},"deprecated":false}},"/api/v1/applications/{nameOrId}/configuration":{"get":{"tags":["ore-si-resources"],"summary":"getConfiguration","operationId":"getConfigurationUsingGET","produces":["application/octet-stream"],"parameters":[{"name":"nameOrId","in":"path","description":"nameOrId","required":true,"type":"string"}],"responses":{"200":{"description":"OK","schema":{"type":"string","format":"byte"}},"401":{"description":"Unauthorized"},"403":{"description":"Forbidden"},"404":{"description":"Not Found"}},"deprecated":false},"post":{"tags":["ore-si-resources"],"summary":"changeConfiguration","operationId":"changeConfigurationUsingPOST","consumes":["multipart/form-data"],"produces":["application/json"],"parameters":[{"name":"comment","in":"query","description":"comment","required":false,"type":"string"},{"name":"file","in":"formData","description":"file","required":true,"type":"file"},{"name":"nameOrId","in":"path","description":"nameOrId","required":true,"type":"string"}],"responses":{"200":{"description":"OK","schema":{"type":"object","additionalProperties":{"type":"object"}}},"201":{"description":"Created"},"401":{"description":"Unauthorized"},"403":{"description":"Forbidden"},"404":{"description":"Not 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columns","additionalProperties":{"type":"object","additionalProperties":{"type":"string"}}}},"title":"LineValidationRuleWithVariableComponentsDescription"},"LocalDateTimeRange":{"type":"object","properties":{"range":{"$ref":"#/definitions/Range«LocalDateTime»"}},"title":"LocalDateTimeRange"},"Locale":{"type":"object","properties":{"country":{"type":"string"},"displayCountry":{"type":"string"},"displayLanguage":{"type":"string"},"displayName":{"type":"string"},"displayScript":{"type":"string"},"displayVariant":{"type":"string"},"extensionKeys":{"type":"array","items":{"$ref":"#/definitions/Character"}},"iso3Country":{"type":"string"},"iso3Language":{"type":"string"},"language":{"type":"string"},"script":{"type":"string"},"unicodeLocaleAttributes":{"type":"array","items":{"type":"string"}},"unicodeLocaleKeys":{"type":"array","items":{"type":"string"}},"variant":{"type":"string"}},"title":"Locale"},"LoginResult":{"type":"object","properties":{"authorizations":{"type":"array","items":{"type":"string"}},"authorizedForApplicationCreation":{"type":"boolean"},"email":{"type":"string"},"id":{"type":"string","format":"uuid"},"login":{"type":"string"},"state":{"type":"string"},"superadmin":{"type":"boolean"}},"title":"LoginResult"},"Ltree":{"type":"object","properties":{"sql":{"type":"string"}},"title":"Ltree"},"Map«string,LineChecker»":{"type":"object","title":"Map«string,LineChecker»","additionalProperties":{"$ref":"#/definitions/LineChecker"}},"Map«string,List«AuthorizationParsed»»":{"type":"object","title":"Map«string,List«AuthorizationParsed»»","additionalProperties":{"$ref":"#/definitions/List"}},"Map«string,List«Authorization»»":{"type":"object","title":"Map«string,List«Authorization»»","additionalProperties":{"$ref":"#/definitions/List"}},"Map«string,List«string»»":{"type":"object","title":"Map«string,List«string»»","additionalProperties":{"$ref":"#/definitions/List"}},"Map«string,Map«string,List«AuthorizationParsed»»»":{"type":"object","title":"Map«string,Map«string,List«AuthorizationParsed»»»","additionalProperties":{"$ref":"#/definitions/Map"}},"Map«string,Set«uuid»»":{"type":"object","title":"Map«string,Set«uuid»»","additionalProperties":{"$ref":"#/definitions/Set"}},"Map«string,boolean»":{"type":"object","title":"Map«string,boolean»","additionalProperties":{"type":"boolean"}},"Map«string,string»":{"type":"object","title":"Map«string,string»","additionalProperties":{"type":"string"}},"MigrationDescription":{"type":"object","required":["components","dataGroup","strategy","variable"],"properties":{"components":{"type":"object","description":"A list of component migration description for this variable","additionalProperties":{"$ref":"#/definitions/AddVariableMigrationDescription"}},"dataGroup":{"type":"string","example":"variables","description":"A data group name"},"strategy":{"type":"string","example":"ADD_VARIABLE","description":"The migration strategy","enum":["ADD_VARIABLE"]},"variable":{"type":"string","example":"CO2","description":"A variable in this data group"}},"title":"MigrationDescription"},"Option":{"type":"object","properties":{"children":{"type":"array","items":{"$ref":"#/definitions/Option"}},"id":{"type":"string"},"label":{"type":"string"}},"title":"Option"},"OreSiUser":{"type":"object","properties":{"accountstate":{"type":"string","enum":["idle","active","pending","closed"]},"authorizations":{"type":"array","items":{"type":"string"}},"creationDate":{"type":"string","format":"date-time"},"email":{"type":"string"},"id":{"type":"string","format":"uuid"},"login":{"type":"string"},"password":{"type":"string"},"updateDate":{"type":"string","format":"date-time"}},"title":"OreSiUser"},"Range«LocalDateTime»":{"type":"object","properties":{"empty":{"type":"boolean"}},"title":"Range«LocalDateTime»"},"Reference":{"type":"object","properties":{"children":{"type":"array","items":{"type":"string"}},"columns":{"type":"object","additionalProperties":{"$ref":"#/definitions/Column"}},"dynamicColumns":{"type":"object","additionalProperties":{"$ref":"#/definitions/DynamicColumn"}},"id":{"type":"string"},"label":{"type":"string"},"tags":{"type":"array","items":{"type":"string"}}},"title":"Reference"},"ReferenceDescription":{"type":"object","required":["columns","dynamicColumns","keyColumns"],"properties":{"allowUnexpectedColumns":{"type":"boolean","description":"Possibility that columns of the file are not described"},"columns":{"type":"object","description":"The list of columns descriptions.","additionalProperties":{"$ref":"#/definitions/ReferenceStaticNotComputedColumnDescription"}},"computedColumns":{"type":"object","description":"The list of computed columns descriptions. Computed columns are not provided in the CSV but computed line by line when importing.","additionalProperties":{"$ref":"#/definitions/ReferenceStaticComputedColumnDescription"}},"dynamicColumns":{"type":"object","description":"The list of dynamic columns descriptions. Dynamic columns names refers to an other reference.","additionalProperties":{"$ref":"#/definitions/ReferenceDynamicColumnDescription"}},"internationalizationDisplay":{"$ref":"#/definitions/InternationalizationDisplay"},"internationalizationName":{"type":"object","description":"How to translate this name in differents locales","additionalProperties":{"type":"string"}},"internationalizedColumns":{"type":"object","description":"Some columns used as key and the reference to translation in other columns","additionalProperties":{"type":"object","additionalProperties":{"type":"string"}}},"keyColumns":{"type":"array","description":"The list of columns composing the natural key of a row.","items":{"type":"string"}},"separator":{"type":"string","description":"The separator in csv files"},"tags":{"type":"array","items":{"type":"string"}},"validations":{"type":"object","description":"The list of validations to perform on this reference.","additionalProperties":{"$ref":"#/definitions/LineValidationRuleWithColumnsDescription"}}},"title":"ReferenceDescription"},"ReferenceDynamicColumnDescription":{"type":"object","required":["headerPrefix","presenceConstraint","reference","referenceColumnToLookForHeader"],"properties":{"headerPrefix":{"type":"string","example":"rt_","description":"The header prefix. All columns that starts with this prefix use this description"},"internationalizationName":{"type":"object","description":"How to translate this name in differents locales","additionalProperties":{"type":"string"}},"presenceConstraint":{"type":"string","example":"MANDATORY","description":"If the column is mandatory or not","enum":["MANDATORY","OPTIONAL","ABSENT"]},"reference":{"type":"string","example":"proprietes_taxon","description":"The reference that contains the column names"},"referenceColumnToLookForHeader":{"type":"string","example":"name","description":"The column in 'reference' that contains the column names"},"tags":{"type":"array","example":"variable","description":"Some tags for the column","items":{"type":"string"}}},"title":"ReferenceDynamicColumnDescription"},"ReferenceStaticComputedColumnDescription":{"type":"object","required":["presenceConstraint"],"properties":{"checker":{"description":"Define a checker to apply for this column on each line of the CSV at import","$ref":"#/definitions/CheckerDescription"},"computation":{"description":"Explain how to compute the value for this column given other columns","$ref":"#/definitions/GroovyConfiguration"},"presenceConstraint":{"type":"string","example":"MANDATORY","description":"If the column is mandatory or not","enum":["MANDATORY","OPTIONAL","ABSENT"]},"tags":{"type":"array","example":"variable","description":"Some tags for the column","items":{"type":"string"}}},"title":"ReferenceStaticComputedColumnDescription"},"ReferenceStaticNotComputedColumnDescription":{"type":"object","required":["presenceConstraint"],"properties":{"checker":{"description":"Define a checker to apply for this column on each line of the CSV at import","$ref":"#/definitions/CheckerDescription"},"defaultValue":{"description":"Define a default value for this column: it will be computed if the CSV contains an empty cell","$ref":"#/definitions/GroovyConfiguration"},"presenceConstraint":{"type":"string","example":"MANDATORY","description":"If the column is mandatory or not","enum":["MANDATORY","OPTIONAL","ABSENT"]},"tags":{"type":"array","example":"variable","description":"Some tags for the column","items":{"type":"string"}}},"title":"ReferenceStaticNotComputedColumnDescription"},"ReferenceSynthesis":{"type":"object","properties":{"lineCount":{"type":"integer","format":"int32"},"referenceType":{"type":"string"}},"title":"ReferenceSynthesis"},"ReferenceValue":{"type":"object","properties":{"hierarchicalKey":{"type":"string"},"hierarchicalReference":{"type":"string"},"id":{"type":"string"},"naturalKey":{"type":"string"},"referencingReference":{"type":"object","additionalProperties":{"type":"object","additionalProperties":{"type":"array","items":{"type":"string"}}}},"refsLinkedTo":{"type":"object","additionalProperties":{"type":"array","items":{"type":"string","format":"uuid"}}},"values":{"type":"object"}},"title":"ReferenceValue"},"RepeatedColumnBindingDescription":{"type":"object","required":["boundTo","exportHeader","headerPattern"],"properties":{"boundTo":{"description":"The variable/component to bind to. The content of the cell from the CSV will be pushed in this variable/component","$ref":"#/definitions/VariableComponentKey"},"exportHeader":{"type":"string","example":"SMP","description":"The export header (for value) of these columns"},"headerPattern":{"type":"string","example":"(.*)_([0-9]*)_([0-9]*)","description":"The regexp pattern to find repeated columns to bind"},"tokens":{"type":"array","description":"How bind the result of regexp parenthesis. $1 to first pattern, $2 is the second ...","items":{"$ref":"#/definitions/HeaderPatternToken"}}},"title":"RepeatedColumnBindingDescription"},"Repository":{"type":"object","properties":{"authorizationScope":{"type":"object","additionalProperties":{"type":"integer","format":"int32"}},"endDate":{"$ref":"#/definitions/TokenDateDescription"},"filePattern":{"type":"string"},"startDate":{"$ref":"#/definitions/TokenDateDescription"}},"title":"Repository"},"RepositoryDescription":{"type":"object","properties":{"authorizationScope":{"type":"object","additionalProperties":{"type":"integer","format":"int32"}},"endDate":{"$ref":"#/definitions/TokenDateDescription"},"filePattern":{"type":"string"},"startDate":{"$ref":"#/definitions/TokenDateDescription"}},"title":"RepositoryDescription"},"ResponseEntity":{"type":"object","properties":{"body":{"type":"object"},"statusCode":{"type":"string","enum":["100 CONTINUE","101 SWITCHING_PROTOCOLS","102 PROCESSING","103 CHECKPOINT","200 OK","201 CREATED","202 ACCEPTED","203 NON_AUTHORITATIVE_INFORMATION","204 NO_CONTENT","205 RESET_CONTENT","206 PARTIAL_CONTENT","207 MULTI_STATUS","208 ALREADY_REPORTED","226 IM_USED","300 MULTIPLE_CHOICES","301 MOVED_PERMANENTLY","302 FOUND","302 MOVED_TEMPORARILY","303 SEE_OTHER","304 NOT_MODIFIED","305 USE_PROXY","307 TEMPORARY_REDIRECT","308 PERMANENT_REDIRECT","400 BAD_REQUEST","401 UNAUTHORIZED","402 PAYMENT_REQUIRED","403 FORBIDDEN","404 NOT_FOUND","405 METHOD_NOT_ALLOWED","406 NOT_ACCEPTABLE","407 PROXY_AUTHENTICATION_REQUIRED","408 REQUEST_TIMEOUT","409 CONFLICT","410 GONE","411 LENGTH_REQUIRED","412 PRECONDITION_FAILED","413 PAYLOAD_TOO_LARGE","413 REQUEST_ENTITY_TOO_LARGE","414 URI_TOO_LONG","414 REQUEST_URI_TOO_LONG","415 UNSUPPORTED_MEDIA_TYPE","416 REQUESTED_RANGE_NOT_SATISFIABLE","417 EXPECTATION_FAILED","418 I_AM_A_TEAPOT","419 INSUFFICIENT_SPACE_ON_RESOURCE","420 METHOD_FAILURE","421 DESTINATION_LOCKED","422 UNPROCESSABLE_ENTITY","423 LOCKED","424 FAILED_DEPENDENCY","426 UPGRADE_REQUIRED","428 PRECONDITION_REQUIRED","429 TOO_MANY_REQUESTS","431 REQUEST_HEADER_FIELDS_TOO_LARGE","451 UNAVAILABLE_FOR_LEGAL_REASONS","500 INTERNAL_SERVER_ERROR","501 NOT_IMPLEMENTED","502 BAD_GATEWAY","503 SERVICE_UNAVAILABLE","504 GATEWAY_TIMEOUT","505 HTTP_VERSION_NOT_SUPPORTED","506 VARIANT_ALSO_NEGOTIATES","507 INSUFFICIENT_STORAGE","508 LOOP_DETECTED","509 BANDWIDTH_LIMIT_EXCEEDED","510 NOT_EXTENDED","511 NETWORK_AUTHENTICATION_REQUIRED"]},"statusCodeValue":{"type":"integer","format":"int32"}},"title":"ResponseEntity"},"RightsRequest":{"type":"object","properties":{"description":{"$ref":"#/definitions/RightsRequestDescription"}},"title":"RightsRequest"},"RightsRequestDescription":{"type":"object","properties":{"description":{"type":"object","additionalProperties":{"type":"string"}},"format":{"type":"object","description":"An Rights request is to request rights onto an application providing additional information described in the configuration","additionalProperties":{"$ref":"#/definitions/FieldFormat"}}},"title":"RightsRequestDescription"},"RightsRequestResult":{"type":"object","properties":{"application":{"type":"string","format":"uuid"},"authorizationByDatatypeAndPath":{"type":"object","additionalProperties":{"type":"object","additionalProperties":{"type":"object","additionalProperties":{"type":"array","items":{"$ref":"#/definitions/AuthorizationParsed"}}}}},"comment":{"type":"string"},"id":{"type":"string","format":"uuid"},"rightsRequest":{"type":"object","additionalProperties":{"type":"object","additionalProperties":{"type":"array","items":{"$ref":"#/definitions/AuthorizationParsed"}}}},"rightsRequestForm":{"type":"object","additionalProperties":{"type":"string"}},"setted":{"type":"boolean"},"user":{"type":"string","format":"uuid"}},"title":"RightsRequestResult"},"SortedMap«string,ColumnDescription»":{"type":"object","title":"SortedMap«string,ColumnDescription»","additionalProperties":{"$ref":"#/definitions/ColumnDescription"}},"StreamingResponseBody":{"type":"object","title":"StreamingResponseBody"},"TokenDateDescription":{"type":"object","properties":{"token":{"type":"integer","format":"int32"}},"title":"TokenDateDescription"},"TransformationConfiguration":{"type":"object","properties":{"codify":{"type":"boolean"},"groovy":{"$ref":"#/definitions/GroovyConfiguration"}},"title":"TransformationConfiguration"},"TransformationConfigurationDescription":{"type":"object","properties":{"codify":{"type":"boolean","example":true,"description":"If true, codifies the column value. The value will be escaped to a format suitable for a naturel key. Will be applied after 'groovy' expression if both are active."},"groovy":{"description":"A groovy expression to transform the value before the checker checks it","$ref":"#/definitions/GroovyConfiguration"}},"title":"TransformationConfigurationDescription"},"User":{"type":"object","properties":{"id":{"type":"string","format":"uuid"},"label":{"type":"string"}},"title":"User"},"ValidationCheckResult":{"type":"object","properties":{"error":{"type":"boolean"},"level":{"type":"string","enum":["SUCCESS","WARN","ERROR"]},"message":{"type":"string"},"messageParams":{"type":"object"},"success":{"type":"boolean"}},"title":"ValidationCheckResult"},"Variable":{"type":"object","properties":{"chartDescription":{"$ref":"#/definitions/Chart"},"components":{"type":"object","additionalProperties":{"$ref":"#/definitions/Component"}},"id":{"type":"string"},"label":{"type":"string"},"tags":{"type":"array","items":{"type":"string"}}},"title":"Variable"},"VariableComponentKey":{"type":"object","properties":{"component":{"type":"string"},"id":{"type":"string"},"type":{"type":"string","enum":["variableComponentKey","column"]},"variable":{"type":"string"}},"title":"VariableComponentKey"},"VariableComponentWithDefaultValueDescription":{"type":"object","properties":{"checker":{"description":"A checker description","$ref":"#/definitions/CheckerDescription"},"defaultValue":{"description":"A default value if the cell in the imported CSV is empty","$ref":"#/definitions/GroovyConfiguration"},"hidden":{"type":"boolean"},"tags":{"type":"array","example":"variable","description":"Some tags for the variable component description","items":{"type":"string"}}},"title":"VariableComponentWithDefaultValueDescription"},"VariableDescription":{"type":"object","required":["components","computedComponents"],"properties":{"chartDescription":{"description":"A description to create disponibilité charts","$ref":"#/definitions/Chart"},"components":{"type":"object","description":"The list of components for this variable","additionalProperties":{"$ref":"#/definitions/VariableComponentWithDefaultValueDescription"}},"computedComponents":{"type":"object","description":"The list of computed components for this variable","additionalProperties":{"$ref":"#/definitions/ComputedVariableComponentDescription"}},"hidden":{"type":"boolean"},"tags":{"type":"array","example":"variable","description":"Some tags for the variable description","items":{"type":"string"}}},"title":"VariableDescription"}}}
\ No newline at end of file
diff --git a/src/main/java/fr/inra/oresing/rest/OreSiService.java b/src/main/java/fr/inra/oresing/rest/OreSiService.java
index dc41bf95b..8b5850a9d 100644
--- a/src/main/java/fr/inra/oresing/rest/OreSiService.java
+++ b/src/main/java/fr/inra/oresing/rest/OreSiService.java
@@ -917,7 +917,7 @@ public class OreSiService {
return lineAsMapToRecordsFn;
}
- private boolean testHeaderIsExpected(LinkedList<Map.Entry<String, String>> line, String expectedColumn, boolean isAllowUnexpectedColumns) {
+ private boolean testHeaderIsExpected(LinkedList<Map.Entry<String, String>> line, String expectedColumn) {
String header;
do {
if (line.isEmpty()) {
@@ -925,9 +925,6 @@ public class OreSiService {
}
Map.Entry<String, String> nextColumn = line.poll();
header = nextColumn.getKey();
- if (!header.equals(expectedColumn) && !isAllowUnexpectedColumns) {
- throw new IllegalArgumentException(header);
- }
} while (!header.equals(expectedColumn));
return true;
}
@@ -947,13 +944,21 @@ public class OreSiService {
recordPrototype = new LinkedHashMap<>();
for (Configuration.ColumnBindingDescription column : formatDescription.getColumns()) {
Map.Entry<String, String> poll = lineCopy.poll();
- try {
- testHeaderIsExpected(lineCopy, column.getHeader(), formatDescription.isAllowUnexpectedColumns());
- } catch (Exception e) {
- if (e.getMessage() != null) {
- throw InvalidDatasetContentException.forUnexpectedHeaderColumn(column.getHeader(), e.getMessage(), formatDescription.getHeaderLine());
- } else {
- throw InvalidDatasetContentException.forUnexpectedHeaderColumnsInList(column.getHeader(), line, formatDescription.getHeaderLine());
+ if (!formatDescription.isAllowUnexpectedColumns()){
+ String header = poll.getKey();
+ String expected = column.getHeader();
+ if (!header.equals(expected)) {
+ throw InvalidDatasetContentException.forUnexpectedHeaderColumn(expected, header, formatDescription.getHeaderLine());
+ }
+ } else {
+ try {
+ testHeaderIsExpected(lineCopy, column.getHeader());
+ } catch (Exception e) {
+ if (e.getMessage() != null) {
+ throw InvalidDatasetContentException.forUnexpectedHeaderColumn(column.getHeader(), e.getMessage(), formatDescription.getHeaderLine());
+ } else {
+ throw InvalidDatasetContentException.forUnexpectedHeaderColumnsInList(column.getHeader(), line, formatDescription.getHeaderLine());
+ }
}
}
assert poll != null;
diff --git a/src/test/java/fr/inra/oresing/rest/Fixtures.java b/src/test/java/fr/inra/oresing/rest/Fixtures.java
index 8bb8b3e93..94f898625 100644
--- a/src/test/java/fr/inra/oresing/rest/Fixtures.java
+++ b/src/test/java/fr/inra/oresing/rest/Fixtures.java
@@ -250,7 +250,7 @@ public class Fixtures {
DataTypeErrors.put("unexpectedHeaderColumnsInList", List.of(
"\"Nom parcelle\";\"Nom traitement\";\"Date\";\"Time\";\"SWC_1_15\";\"qc\";\"SWC_2_15\";\"qc\";\"SWC_1_45\";\"qc\";\"SWC_2_45\";\"qc\";\"SWC_1_75\";\"qc\";\"SWC_2_75\";\"qc\";\"SWC_1_105\";\"qc\";\"SWC_2_105\";\"qc\";\"SWC_1_135\";\"qc\";\"SWC_2_135\";\"qc\";\"SWC_1_165\";\"qc\";\"SWC_2_165\";\"qc\";\"SWC_1_195\";\"qc\";\"SWC_2_195\";\"qc\";\"SWC_1_235\";\"qc\";\"DateTime\";\"SWC_2_235\";\"qc\"",
"\"Nom parcelle\";\"Nom traitement\";\"Dates\";\"Time\";\"SWC_1_15\";\"qc\";\"SWC_2_15\";\"qc\";\"SWC_1_45\";\"qc\";\"SWC_2_45\";\"qc\";\"SWC_1_75\";\"qc\";\"SWC_2_75\";\"qc\";\"SWC_1_105\";\"qc\";\"SWC_2_105\";\"qc\";\"SWC_1_135\";\"qc\";\"SWC_2_135\";\"qc\";\"SWC_1_165\";\"qc\";\"SWC_2_165\";\"qc\";\"SWC_1_195\";\"qc\";\"SWC_2_195\";\"qc\";\"SWC_1_235\";\"qc\";\"DateTime\";\"SWC_2_235\";\"qc\"",
- "[{\"validationCheckResult\":{\"level\":\"ERROR\",\"message\":\"unexpectedHeaderColumnsInList\",\"messageParams\":{\"actualHeaderColumns\":[{\"Nom parcelle\":\"estreesmons.estreesmons__a06\"},{\"Nom traitement\":\"T3\"},{\"Dates\":\"01/07/2010\"},{\"Time\":\"00:00\"},{\"SWC_1_15\":\"8.50\"},{\"qc\":\"0\"},{\"SWC_2_15\":\"\"},{\"qc\":\"\"},{\"SWC_1_45\":\"16.96\"},{\"qc\":\"0\"},{\"SWC_2_45\":\"\"},{\"qc\":\"\"},{\"SWC_1_75\":\"28.98\"},{\"qc\":\"0\"},{\"SWC_2_75\":\"\"},{\"qc\":\"\"},{\"SWC_1_105\":\"30.14\"},{\"qc\":\"0\"},{\"SWC_2_105\":\"\"},{\"qc\":\"\"},{\"SWC_1_135\":\"32.18\"},{\"qc\":\"0\"},{\"SWC_2_135\":\"\"},{\"qc\":\"\"},{\"SWC_1_165\":\"32.01\"},{\"qc\":\"0\"},{\"SWC_2_165\":\"\"},{\"qc\":\"\"},{\"SWC_1_195\":\"32.18\"},{\"qc\":\"0\"},{\"SWC_2_195\":\"\"},{\"qc\":\"\"},{\"SWC_1_235\":\"35.43\"},{\"qc\":\"0\"},{\"DateTime\":\"01/07/2010\"},{\"SWC_2_235\":\"\"},{\"qc\":\"\"}],\"expectedHeaderColumn\":\"Nom parcelle\"},\"error\":true,\"success\":false},\"lineNumber\":7}]"
+ "[{\"validationCheckResult\":{\"level\":\"ERROR\",\"message\":\"unexpectedHeaderColumn\",\"messageParams\":{\"actualHeaderColumns\":[{\"Nom parcelle\":\"estreesmons.estreesmons__a06\"},{\"Nom traitement\":\"T3\"},{\"Dates\":\"01/07/2010\"},{\"Time\":\"00:00\"},{\"SWC_1_15\":\"8.50\"},{\"qc\":\"0\"},{\"SWC_2_15\":\"\"},{\"qc\":\"\"},{\"SWC_1_45\":\"16.96\"},{\"qc\":\"0\"},{\"SWC_2_45\":\"\"},{\"qc\":\"\"},{\"SWC_1_75\":\"28.98\"},{\"qc\":\"0\"},{\"SWC_2_75\":\"\"},{\"qc\":\"\"},{\"SWC_1_105\":\"30.14\"},{\"qc\":\"0\"},{\"SWC_2_105\":\"\"},{\"qc\":\"\"},{\"SWC_1_135\":\"32.18\"},{\"qc\":\"0\"},{\"SWC_2_135\":\"\"},{\"qc\":\"\"},{\"SWC_1_165\":\"32.01\"},{\"qc\":\"0\"},{\"SWC_2_165\":\"\"},{\"qc\":\"\"},{\"SWC_1_195\":\"32.18\"},{\"qc\":\"0\"},{\"SWC_2_195\":\"\"},{\"qc\":\"\"},{\"SWC_1_235\":\"35.43\"},{\"qc\":\"0\"},{\"DateTime\":\"01/07/2010\"},{\"SWC_2_235\":\"\"},{\"qc\":\"\"}],\"expectedHeaderColumn\":\"Nom parcelle\"},\"error\":true,\"success\":false},\"lineNumber\":7}]"
));
return DataTypeErrors;
}
@@ -279,7 +279,7 @@ public class Fixtures {
DataTypeErrors.put("unexpectedHeaderColumnsInList", List.of(
"\"Nom parcelle\";\"Nom traitement\";\"Date\";\"Time\";\"SWC_1_15\";\"qc\";\"SWC_2_15\";\"qc\";\"SWC_1_45\";\"qc\";\"SWC_2_45\";\"qc\";\"SWC_1_75\";\"qc\";\"SWC_2_75\";\"qc\";\"SWC_1_105\";\"qc\";\"SWC_2_105\";\"qc\";\"SWC_1_135\";\"qc\";\"SWC_2_135\";\"qc\";\"SWC_1_165\";\"qc\";\"SWC_2_165\";\"qc\";\"SWC_1_195\";\"qc\";\"SWC_2_195\";\"qc\";\"SWC_1_235\";\"qc\";\"DateTime\";\"SWC_2_235\";\"qc\"",
"\"Nom parcelle\";\"Nom traitement\";\"Dates\";\"Time\";\"SWC_1_15\";\"qc\";\"SWC_2_15\";\"qc\";\"SWC_1_45\";\"qc\";\"SWC_2_45\";\"qc\";\"SWC_1_75\";\"qc\";\"SWC_2_75\";\"qc\";\"SWC_1_105\";\"qc\";\"SWC_2_105\";\"qc\";\"SWC_1_135\";\"qc\";\"SWC_2_135\";\"qc\";\"SWC_1_165\";\"qc\";\"SWC_2_165\";\"qc\";\"SWC_1_195\";\"qc\";\"SWC_2_195\";\"qc\";\"SWC_1_235\";\"qc\";\"DateTime\";\"SWC_2_235\";\"qc\"",
- "[{\"validationCheckResult\":{\"level\":\"ERROR\",\"message\":\"unexpectedHeaderColumn\",\"messageParams\":{\"actualHeaderColumn\":\"Nom traitement\",\"expectedHeaderColumn\":\"Nom parcelle\"},\"error\":true,\"success\":false},\"lineNumber\":7}]"
+ "[{\"validationCheckResult\":{\"level\":\"ERROR\",\"message\":\"unexpectedHeaderColumn\",\"messageParams\":{\"actualHeaderColumn\":\"Dates\",\"expectedHeaderColumn\":\"Date\"},\"error\":true,\"success\":false},\"lineNumber\":7}]"
));
return DataTypeErrors;
}
@@ -1049,4 +1049,4 @@ public class Fixtures {
return dataTypes;
}
}
-}
\ No newline at end of file
+}
diff --git a/src/test/resources/data/recursivite/recusivite.yaml b/src/test/resources/data/recursivite/recusivite.yaml
index 27a2c7324..528633d92 100644
--- a/src/test/resources/data/recursivite/recusivite.yaml
+++ b/src/test/resources/data/recursivite/recusivite.yaml
@@ -3,7 +3,7 @@ application:
defaultLanguage: fr
internationalizationName:
fr: Récursivité
- en: recusivity
+ en: Recusivity
name: recursivite
version: 1
compositeReferences:
diff --git a/ui/cypress/fixtures/applications/errors/ref_ola_errors.json b/ui/cypress/fixtures/applications/errors/ref_ola_errors.json
index d2ad8a7fd..f389bc925 100644
--- a/ui/cypress/fixtures/applications/errors/ref_ola_errors.json
+++ b/ui/cypress/fixtures/applications/errors/ref_ola_errors.json
@@ -1 +1 @@
-{"duplicatedHeaders":"[{\"validationCheckResult\":{\"level\":\"ERROR\",\"message\":\"duplicatedHeaders\",\"messageParams\":{\"duplicatedHeaders\":[\"définition_fr\"]},\"error\":true,\"success\":false},\"lineNumber\":1}]","patternNotMatchedWithColumn":"[{\"validationCheckResult\":{\"level\":\"ERROR\",\"message\":\"invalidDateWithColumn\",\"messageParams\":{\"target\":{\"column\":\"Date\",\"type\":\"PARAM_COLUMN\"},\"pattern\":\"dd/MM/yyyy\",\"value\":\"12:00:00\"},\"target\":{\"column\":\"Date\",\"type\":\"PARAM_COLUMN\"},\"date\":null,\"localDateTime\":null,\"error\":true,\"success\":false},\"lineNumber\":2}]","duplicatedLineInReference":"[{\"validationCheckResult\":{\"level\":\"ERROR\",\"message\":\"duplicatedLineInReference\",\"messageParams\":{\"file\":\"proprietes_taxon\",\"lineNumber\":40,\"otherLines\":[39,40],\"duplicateKey\":\"notes_libres\"},\"error\":true,\"success\":false},\"lineNumber\":40}]","invalidDateWithColumn":"[{\"validationCheckResult\":{\"level\":\"ERROR\",\"message\":\"invalidDateWithColumn\",\"messageParams\":{\"target\":{\"column\":\"Date\",\"type\":\"PARAM_COLUMN\"},\"pattern\":\"dd/MM/yyyy\",\"value\":\"01/01/16\"},\"target\":{\"column\":\"Date\",\"type\":\"PARAM_COLUMN\"},\"date\":null,\"localDateTime\":null,\"error\":true,\"success\":false},\"lineNumber\":2}]","invalidDate":"[{\"validationCheckResult\":{\"level\":\"ERROR\",\"message\":\"invalidDate\",\"messageParams\":{\"target\":{\"variable\":\"date\",\"component\":\"day\",\"id\":\"date_day\",\"type\":\"PARAM_VARIABLE_COMPONENT_KEY\"},\"pattern\":\"dd/MM/yyyy\",\"value\":\"x16/12/2020\"},\"target\":{\"variable\":\"date\",\"component\":\"day\",\"id\":\"date_day\",\"type\":\"PARAM_VARIABLE_COMPONENT_KEY\"},\"date\":null,\"localDateTime\":null,\"error\":true,\"success\":false},\"lineNumber\":17}]","invalidFloat":"[{\"validationCheckResult\":{\"level\":\"ERROR\",\"message\":\"invalidFloat\",\"messageParams\":{\"target\":{\"variable\":\"valeurs 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\ No newline at end of file
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\ No newline at end of file
diff --git a/ui/cypress/fixtures/applications/ore/monsore/datatypes/authorisation/authorizations.json b/ui/cypress/fixtures/applications/ore/monsore/datatypes/authorisation/authorizations.json
index a7fd8bb47..abba39805 100644
--- a/ui/cypress/fixtures/applications/ore/monsore/datatypes/authorisation/authorizations.json
+++ b/ui/cypress/fixtures/applications/ore/monsore/datatypes/authorisation/authorizations.json
@@ -1 +1 @@
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\ No newline at end of file
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\ No newline at end of file
diff --git a/ui/cypress/fixtures/applications/ore/monsore/datatypes/authorisation/grantable.json b/ui/cypress/fixtures/applications/ore/monsore/datatypes/authorisation/grantable.json
index 5332b8da3..20130f2f4 100644
--- a/ui/cypress/fixtures/applications/ore/monsore/datatypes/authorisation/grantable.json
+++ b/ui/cypress/fixtures/applications/ore/monsore/datatypes/authorisation/grantable.json
@@ -1 +1 @@
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\ No newline at end of file
diff --git a/ui/cypress/fixtures/applications/ore/monsore/datatypes/pem.json b/ui/cypress/fixtures/applications/ore/monsore/datatypes/pem.json
index 2bc8d7d6a..6b1a346f7 100644
--- a/ui/cypress/fixtures/applications/ore/monsore/datatypes/pem.json
+++ b/ui/cypress/fixtures/applications/ore/monsore/datatypes/pem.json
@@ -1 +1 @@
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diff --git a/ui/cypress/fixtures/applications/ore/monsore/monsoere.json b/ui/cypress/fixtures/applications/ore/monsore/monsoere.json
index b46f31569..26d0eb9cc 100644
--- a/ui/cypress/fixtures/applications/ore/monsore/monsoere.json
+++ b/ui/cypress/fixtures/applications/ore/monsore/monsoere.json
@@ -1 +1 @@
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diff --git a/ui/cypress/fixtures/applications/ore/monsore/references/projet.json b/ui/cypress/fixtures/applications/ore/monsore/references/projet.json
index fd9fb5215..247bc0677 100644
--- a/ui/cypress/fixtures/applications/ore/monsore/references/projet.json
+++ b/ui/cypress/fixtures/applications/ore/monsore/references/projet.json
@@ -1 +1 @@
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diff --git a/ui/cypress/fixtures/applications/ore/monsore/references/sites.json b/ui/cypress/fixtures/applications/ore/monsore/references/sites.json
index eedc3255f..98219f711 100644
--- a/ui/cypress/fixtures/applications/ore/monsore/references/sites.json
+++ b/ui/cypress/fixtures/applications/ore/monsore/references/sites.json
@@ -1 +1 @@
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diff --git a/ui/cypress/fixtures/applications/ore/monsore/references/type_de_sites.json b/ui/cypress/fixtures/applications/ore/monsore/references/type_de_sites.json
index b85678b20..abb3ff160 100644
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