[fastqc] CANCELLED due to time limit
Add more time to fastqc.
During Mosquito dev on pork samples, all fastqc jobs were cancelled due to time limit (3 * 45m)
sbsuser@node115 ~/work/test/Dev_Mosquito_ED/PigHeat-DNAPrep-Mosq/nextflow cat work/33/e3e29efcc1cd1b6dd878cb1e1172f9/.command.sh
#!/bin/bash -euo pipefail
fastqc -t 1 --nogroup --noextract --outdir ./ PigHeat-dil5-rep2_S1_L001_R2_001.fastq.gz
sbsuser@node115 ~/work/test/Dev_Mosquito_ED/PigHeat-DNAPrep-Mosq/nextflow cat work/33/e3e29efcc1cd1b6dd878cb1e1172f9/.command.out
sbsuser@node115 ~/work/test/Dev_Mosquito_ED/PigHeat-DNAPrep-Mosq/nextflow cat work/33/e3e29efcc1cd1b6dd878cb1e1172f9/.command.log
Started analysis of PigHeat-dil5-rep2_S1_L001_R2_001.fastq.gz
Approx 5% complete for PigHeat-dil5-rep2_S1_L001_R2_001.fastq.gz
Approx 10% complete for PigHeat-dil5-rep2_S1_L001_R2_001.fastq.gz
Approx 15% complete for PigHeat-dil5-rep2_S1_L001_R2_001.fastq.gz
Approx 20% complete for PigHeat-dil5-rep2_S1_L001_R2_001.fastq.gz
Approx 25% complete for PigHeat-dil5-rep2_S1_L001_R2_001.fastq.gz
Approx 30% complete for PigHeat-dil5-rep2_S1_L001_R2_001.fastq.gz
slurmstepd: error: *** JOB 40793161 ON node119 CANCELLED AT 2022-11-09T15:17:08 DUE TO TIME LIMIT ***
Edited by Eden Darnige