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[md5sum] Need more time for the process

The md5sum generating process failed because of time limit :

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## GeT-nextflow-NGL-Bi/wf-Illumina-nf execution completed unsuccessfully! ##
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The exit status of the task that caused the workflow execution to fail was: null.
The full error message was:

Error executing process > 'QC_ANALYSIS:ILLUMINA_QC:CORE:MD5SUM'

Caused by:
  Process exceeded running time limit (1h)

Command executed:

  md5sum 60961-SM1_S3_L003_R2_001.fastq.gz DES-SM2G10_S19_L003_R2_001.fastq.gz 96D31132-SM4_S6_L003_R2_001.fastq.gz 60961-SM1_S3_L003_R1_001.fastq.gz 96D3151-N3_S10_L003_R1_001.fastq.gz DES-N1_S15_L003_R2_001.fastq.gz 96D3151-SM1_S11_L003_R2_001.fastq.gz 60961-N3_S2_L003_R2_001.fastq.gz DES-N2_S16_L003_R1_001.fastq.gz 96D31137-SM1_S7_L003_R2_001.fastq.gz 96D3169-SM1_S13_L003_R2_001.fastq.gz 96D3151-N1_S9_L003_R1_001.fastq.gz DES-SM1G10_S17_L003_R1_001.fastq.gz DES-N2_S16_L003_R2_001.fastq.gz DES-SM2G9_S20_L003_R2_001.fastq.gz DES-SM2G9_S20_L003_R1_001.fastq.gz 60961-N2_S1_L003_R1_001.fastq.gz 60961-N3_S2_L003_R1_001.fastq.gz 96D3151-N3_S10_L003_R2_001.fastq.gz 96D3169-SM2_S14_L003_R1_001.fastq.gz 96D3151-SM1_S11_L003_R1_001.fastq.gz 96D3151-SM2_S12_L003_R1_001.fastq.gz 96D3151-SM2_S12_L003_R2_001.fastq.gz DES-N1_S15_L003_R1_001.fastq.gz 96D31137-SM2_S8_L003_R2_001.fastq.gz DES-SM1G9_S18_L003_R2_001.fastq.gz 96D3169-SM1_S13_L003_R1_001.fastq.gz 60961-SM2_S4_L003_R1_001.fastq.gz DES-SM1G10_S17_L003_R2_001.fastq.gz 96D3169-SM2_S14_L003_R2_001.fastq.gz 96D31137-SM2_S8_L003_R1_001.fastq.gz 96D3151-N1_S9_L003_R2_001.fastq.gz DES-SM1G9_S18_L003_R1_001.fastq.gz 60961-SM2_S4_L003_R2_001.fastq.gz 60961-N2_S1_L003_R2_001.fastq.gz 96D31132-SM4_S6_L003_R1_001.fastq.gz 96D31132-SM3_S5_L003_R2_001.fastq.gz DES-SM2G10_S19_L003_R1_001.fastq.gz 96D31137-SM1_S7_L003_R1_001.fastq.gz 96D31132-SM3_S5_L003_R1_001.fastq.gz > pool-ADNem_fastq.md5sum

Command exit status:
  -

Two solutions :

  • run the process for each files and merge each hash key into unique file
  • increase time according to the number of files