- Jan 19, 2024
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Thomas Lacroix authored
v1.3.0 : updated command line argument --mode to --phylum ; added columns Start_of_most_upstream_SP and Stop_of_most_downstream_SP ; fixed visualization files (.gb, .embl, .gff) generated by ICEscreen for genome accession that generates no significant alignment match ; New ICEscreen command line option: --print_version_dependencies ; fixed [Issue #13](https://forgemia.inra.fr/ices_imes_analysis/icescreen/-/issues/13), [Issue #14](https://forgemia.inra.fr/ices_imes_analysis/icescreen/-/issues/14), [Issue #15](https://forgemia.inra.fr/ices_imes_analysis/icescreen/-/issues/15), and [Issue #16](https://forgemia.inra.fr/ices_imes_analysis/icescreen/-/issues/16) ; only the overall best alignment match for a query locus tag is considered ; more consistent selection of best scoring HMM profile ; module to detect the structure of the mobile element is now generic for the type of signature proteins from the conjugation module
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- Feb 19, 2023
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Thomas Lacroix authored
v1.1.1: minor changes that set the version of the dependency biopython =1.80 instead of >=1.80. The biopython package version 1.81 is incompatible with bcbio-gff version 0.6.9, it throws an ImportError: cannot import name 'UnknownSeq' from 'Bio.Seq'. See https://forgemia.inra.fr/ices_imes_analysis/icescreen/-/issues/6 for more details. See the LOG_public_releases.md file for details on all the releases.
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- Nov 28, 2022
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Thomas Lacroix authored
v1.1.0: this version features an update of the signature proteins database (see the file icescreen_detection_SP/database/blastdb/LOG/log_signature_proteins_database.md for more details) as well as support for multigenbank files, improvements regarding the assignation of the integrases to the conjugation modules in some specific cases, detection of some fragmented SP of the conjugation module, use of locus tag as the primary identifier for the gene, and other improvements and bug fixes (see the LOG_public_releases.md file for more details).
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- Mar 21, 2022
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Thomas Lacroix authored
v1.0.4: This minor update fixes issues related to the InvalidIndexError error of v1.0.3 due to pandas version 1.4.0 and up. ICEscreen can now use the latest pandas version. Automatic testing via gitlab-ci.
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- Nov 30, 2021
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Thomas Lacroix authored
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Thomas Lacroix authored
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