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Merged Raphaël Flores requested to merge dev into master 3 years ago

To be completed.

Edited 3 years ago by Pilar Rodriguez

Activity

Raphaël Flores marked this merge request as ready 3 years ago

marked this merge request as ready
Raphaël Flores marked this merge request as draft 3 years ago

marked this merge request as draft
Pilar Rodriguez added 1 commit 3 years ago
added 1 commit

e9276497 - Development of a script to manage parallelisation

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Pilar Rodriguez marked this merge request as ready 3 years ago

marked this merge request as ready
Pilar Rodriguez marked this merge request as draft 3 years ago

marked this merge request as draft
Pilar Rodriguez added 1 commit 3 years ago
added 1 commit

4f22bea9 - Modification du Snakefile pour la parallelisation de la rule blaster traité par Snk_uniqueFiles.py

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Pilar Rodriguez added 1 commit 3 years ago
added 1 commit

974a5e2a - Ajout du script de Hadi qui calcul la taille des séquences d'un fichier fasta.

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Pilar Rodriguez added 3 commits 3 years ago
added 3 commits

7640673a - extractFLF with other files

28322f7f - extractFLF with other files

c5f3c66d - extractFLF with other files

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Pilar Rodriguez added 5 commits 3 years ago
added 5 commits

3f22decd - Modification for the extractFLF rule and parallelization rule blaster

05e20707 - Adding the rule uniqueCopies

8d1b6f9e - Adding the rule uniqueCopies

7b24ef37 - Merge remote-tracking branch 'origin/dev' into dev

7cbdad46 - Adding the rule uniqueCopies

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Pilar Rodriguez added 1 commit 3 years ago
added 1 commit

ce7f6e9a - Adding the rule catUniCopie

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Pilar Rodriguez added 1 commit 3 years ago
added 1 commit

7404e385 - Changing calls to files in rules reformatFasta and catUniCopie

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Pilar Rodriguez added 1 commit 3 years ago
added 1 commit

2290e243 - Adding stats from unique copies

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SAIDI SOMIA added 1 commit 2 years ago
added 1 commit

868d3147 - Update for Brachypodium Distachyon

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SAIDI SOMIA added 1 commit 2 years ago
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004f56f7 - Adapt gff parsing to different column 9 format + add stats about cliques

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SAIDI SOMIA added 1 commit 2 years ago
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338d225b - Correction stats.py

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SAIDI SOMIA added 1 commit 2 years ago
added 1 commit

577c6298 - Correction uniqueCopies.py, fetch copy name

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SAIDI SOMIA added 1 commit 2 years ago
added 1 commit

abd81d8f - Refactoring Snakefile + run BLR/RM/CEN from TEannot Snakemake

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SAIDI SOMIA added 1 commit 2 years ago
added 1 commit

3f1ee5bb - Optimize Blaster execution: compare copies with same consensus + max threads 1

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SAIDI SOMIA added 1 commit 2 years ago
added 1 commit

f4fb3956 - Add blaster conda environment

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SAIDI SOMIA added 1 commit 2 years ago
added 1 commit

07bc397d - Add minimap2 to replace Blaster

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